Alternatives and similar repositories for HERBS

Users that are interested in HERBS are comparing it to the libraries listed below

• Whitlock-Group / HERBS
  ☆52Updated last year
• petersaj / AP_histology
  Histology processing
  ☆72Updated last month
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆80Updated 9 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 2 weeks ago
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆42Updated 4 years ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated 2 weeks ago
• ETHZ-INS / DLCAnalyzer
  R Scripts to analyze deep lab cut point data and related data
  ☆70Updated 2 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆98Updated last year
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆15Updated last month
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 6 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• SpikeInterface / probeinterface
  Python package to handle probe layout, geometry and wiring to device.
  ☆76Updated last week
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆17Updated this week
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆82Updated last month
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆122Updated last month
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆73Updated this week
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆139Updated last month
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆40Updated last month
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 11 months ago
• BarbourLab / lussac
  Package for automatic post-processing and merging of multiple spike-sorting analyses.
  ☆28Updated last month
• leomol / FPA
  Fiber photometry analysis
  ☆22Updated last month
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆32Updated 3 months ago
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆143Updated 7 months ago
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆30Updated last month
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated 2 years ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 4 months ago
• ThomasAkam / Point_Grey_Bonsai_multi_camera_acquisition
  Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.
  ☆15Updated 10 months ago
• billkarsh / CatGT
  SpikeGLX postprocessing [tshift filter CAR fix join extract]
  ☆14Updated last week