Alternatives and similar repositories for HERBS:

Users that are interested in HERBS are comparing it to the libraries listed below

• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆36Updated 4 months ago
• Whitlock-Group / HERBS
  ☆52Updated 5 months ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆51Updated 3 weeks ago
• petersaj / AP_histology
  Histology processing
  ☆64Updated 11 months ago
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆35Updated 3 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆73Updated 5 months ago
• ETHZ-INS / DLCAnalyzer
  R Scripts to analyze deep lab cut point data and related data
  ☆65Updated 2 years ago
• leomol / FPA
  Fiber photometry analysis
  ☆22Updated 2 months ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆25Updated last week
• talialerner / Photometry-Analysis-Shared
  ☆11Updated 8 years ago
• deisseroth-lab / multifiber
  A GUI and library for doing multi-fiber photometry
  ☆18Updated 7 years ago
• ThomasAkam / Point_Grey_Bonsai_multi_camera_acquisition
  Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.
  ☆13Updated 2 years ago
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆86Updated 2 weeks ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 7 months ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆52Updated last week
• zivlab / CellReg
  Registration of cells across sessions.
  ☆72Updated 6 months ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆51Updated this week
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated 2 months ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆51Updated 3 weeks ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆46Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆24Updated 5 years ago
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆21Updated 3 weeks ago
• tjd2002 / tjd-shared-code
  Neuroscience/electrophsyiology data analysis tools (mostly Matlab)
  ☆14Updated 5 years ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆59Updated 8 months ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆33Updated last month
• neuroinformatics-unit / spikewrap
  A package to manage electrophysiology analysis.
  ☆14Updated last week
• ETHZ-INS / BehaviorFlow
  Code package that allows meta analyses of unsupervised behavior results
  ☆16Updated 5 months ago
• swanandlab / DBscorer
  Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )
  ☆18Updated 4 months ago