Alternatives and similar repositories for genetics-gold-standards

Users that are interested in genetics-gold-standards are comparing it to the libraries listed below

• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆35Updated 9 months ago
• Genentech / midasHLA
  R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…
  ☆14Updated last year
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last week
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆27Updated last year
• Townsend-Lab-Yale / cancereffectsizeR
  cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer
  ☆19Updated 3 weeks ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 months ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated last year
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated this week
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆60Updated last year
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆31Updated last year
• FinucaneLab / gene_features
  ☆36Updated last year
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated 10 months ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• opentargets / genetics-finemapping
  Fine-mapping pipeline for Open Targets Genetics
  ☆27Updated 3 years ago
• heiniglab / scPower
  Experimental design framework for scRNAseq population studies (eQTL and DE)
  ☆46Updated 11 months ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last year
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 3 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated 3 weeks ago
• opentargets / gentropy
  Open Targets python framework for post-GWAS analysis
  ☆49Updated last week
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated 2 weeks ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆39Updated 7 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆43Updated last month
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated last week
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆37Updated 2 months ago
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆48Updated 5 years ago