Code related to the Celligner manuscript
☆46Oct 30, 2020Updated 5 years ago
Alternatives and similar repositories for Celligner_ms
Users that are interested in Celligner_ms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆13Dec 5, 2023Updated 2 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- CellNet, for cancer☆11Jul 14, 2022Updated 4 years ago
- Mollecular Functional Portraits☆44Apr 3, 2024Updated 2 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Sep 2, 2024Updated last year
- ☆21Nov 15, 2020Updated 5 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Mar 6, 2026Updated 4 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆41Mar 31, 2026Updated 3 months ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆16Nov 5, 2025Updated 8 months ago
- ☆10Jan 21, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- workshop platform provider for running docker containers on kubernetes☆19Sep 14, 2021Updated 4 years ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆17Jun 28, 2022Updated 4 years ago
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated 3 weeks ago
- Filtering of PDX samples for mouse derived reads☆31Updated this week
- R package wrapping bedtools☆46Mar 19, 2025Updated last year
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆27Jul 30, 2022Updated 3 years ago
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 7 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Aug 17, 2020Updated 5 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 4 years ago
- Layered enrichment analysis tool enables facile enrichment using various statistics at once.☆19Jun 10, 2026Updated last month
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆41Jan 14, 2024Updated 2 years ago
- ☆15May 7, 2022Updated 4 years ago
- ☆10Jul 9, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆82Jun 13, 2025Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆45Oct 10, 2025Updated 9 months ago
- Pseudotime Analysis for Bulk Data☆19Aug 2, 2024Updated last year
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- R package☆22Dec 16, 2023Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago