Code related to the Celligner manuscript
☆49Oct 30, 2020Updated 6 years ago
Alternatives and similar repositories for Celligner_ms
Users that are interested in Celligner_ms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆15Dec 5, 2023Updated 2 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆31Apr 16, 2020Updated 6 years ago
- CellNet, for cancer☆11Jul 14, 2022Updated 4 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆42Mar 31, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mollecular Functional Portraits☆45Apr 3, 2024Updated 2 years ago
- ☆13Sep 2, 2024Updated 2 years ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated last year
- Genomics Platform Group Reporter☆10Oct 16, 2026Updated 3 weeks ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Mar 6, 2026Updated 7 months ago
- ☆21Nov 15, 2020Updated 5 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 7 years ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆18Jun 28, 2022Updated 4 years ago
- Tutorials for the Monod package, which fits CME models to sequencing data.☆16Mar 19, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- ☆62Dec 27, 2023Updated 2 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets☆13Dec 5, 2019Updated 6 years ago
- Utilities repository to analyze single-cell data from https://www.nature.com/articles/s41467-018-07261-3.☆10Feb 7, 2020Updated 6 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆18Nov 5, 2025Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆46Oct 10, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code associated with MIX-seq manuscript☆16Aug 26, 2020Updated 6 years ago
- ☆11Apr 28, 2025Updated last year
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated last year
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 11 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- workshop platform provider for running docker containers on kubernetes☆19Sep 14, 2021Updated 5 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆119Apr 2, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Filtering of PDX samples for mouse derived reads☆31Jul 28, 2026Updated 3 months ago
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated 4 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆61Oct 26, 2026Updated last week
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Aug 17, 2020Updated 6 years ago
- ☆17Sep 28, 2022Updated 4 years ago
- R package wrapping bedtools☆46Mar 19, 2025Updated last year
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 4 years ago