broadinstitute / Celligner_msLinks
Code related to the Celligner manuscript
☆46Updated 4 years ago
Alternatives and similar repositories for Celligner_ms
Users that are interested in Celligner_ms are comparing it to the libraries listed below
Sorting:
- Immunology-related bioinformatics data and tools☆75Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- Using TCR and expression for sequence embedding☆59Updated 2 months ago
- ☆62Updated 5 years ago
- ☆30Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆24Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated last week
- ☆47Updated 9 months ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆79Updated 3 weeks ago
- ☆87Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆58Updated last year
- R package for the analysis of single-cell immune repertoires☆43Updated 8 months ago
- Fast motif matching in R☆46Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- Tools used in Human Cell Landscape(HCL)☆55Updated 5 years ago
- ☆18Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 months ago
- This is the official repository for the Human Cell Atlas Heart project.☆31Updated 5 years ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 4 years ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆54Updated last year
- Signac☆25Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 5 months ago