broadinstitute / Celligner_msLinks
Code related to the Celligner manuscript
☆46Updated 5 years ago
Alternatives and similar repositories for Celligner_ms
Users that are interested in Celligner_ms are comparing it to the libraries listed below
Sorting:
- Immunology-related bioinformatics data and tools☆76Updated last year
- ☆18Updated 3 years ago
- ☆47Updated 11 months ago
- R package for the analysis of single-cell immune repertoires☆43Updated 10 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆25Updated 3 years ago
- ☆62Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Unified access to several second-generation deconvolution methods☆88Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Using TCR and expression for sequence embedding☆60Updated 3 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- scWGCNA☆61Updated 3 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆59Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ☆88Updated 3 months ago
- ☆59Updated last year
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26Updated 7 years ago
- ☆39Updated 4 years ago
- ☆78Updated last year
- R package to access DoRothEA's regulons☆154Updated last year
- Inference of TCR motifs☆32Updated 5 months ago
- ☆47Updated 5 years ago
- The R Bioconductor package for scMAGeCK.☆13Updated last year
- ☆34Updated 6 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 3 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year