Alternatives and similar repositories for Celligner_ms:

Users that are interested in Celligner_ms are comparing it to the libraries listed below

• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆52Updated last year
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆71Updated 3 weeks ago
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆19Updated 2 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 2 months ago
• liulab-dfci / RIMA_pipeline
  ☆79Updated last year
• KChen-lab / METAFlux
  ☆63Updated 10 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆104Updated 2 years ago
• rpolicastro / scProportionTest
  ☆62Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated last year
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 3 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆54Updated 3 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆59Updated 2 years ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆45Updated 4 months ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆74Updated 2 weeks ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆54Updated 4 years ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆81Updated last year
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆72Updated last year
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆50Updated 2 months ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆34Updated 4 years ago
• mhorlbeck / ScreenProcessing
  ☆64Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• lanagarmire / Asgard
  ☆42Updated last year
• McGranahanLab / TcellExTRECT
  ☆47Updated 3 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆77Updated 8 months ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆58Updated 4 years ago