Alternatives and similar repositories for Celligner_ms

Users that are interested in Celligner_ms are comparing it to the libraries listed below

• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 6 months ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Updated 3 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆58Updated last week
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆73Updated last year
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆23Updated 2 years ago
• mhorlbeck / ScreenProcessing
  ☆65Updated 2 years ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆73Updated 3 weeks ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated this week
• PierreBSC / Viral-Track
  ☆61Updated 5 years ago
• mathewchamberlain / SignacX
  Signac
  ☆25Updated 2 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 7 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 3 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆149Updated last year
• KChen-lab / METAFlux
  ☆69Updated last year
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 3 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• theislab / AutoGeneS
  ☆61Updated 4 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 10 months ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆88Updated 6 months ago
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆56Updated 5 years ago
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆56Updated last year