Alternatives and similar repositories for CPTAC_PanCan_PTM_2023

Users that are interested in CPTAC_PanCan_PTM_2023 are comparing it to the libraries listed below

• dzhakparov / GeneSelectR
  ☆19Updated last year
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆31Updated 4 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 6 months ago
• quadbio / RNAseq_tutorial
  ☆28Updated 8 months ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆32Updated 3 years ago
• almeidasilvaf / BioNERO
  Easy and comprehensive biological network reconstruction and analysis
  ☆29Updated 9 months ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆51Updated 9 months ago
• pablo-gar / somatic_mutations_GTEx
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆15Updated 5 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago
• YangLab / RADAR
  RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
  ☆20Updated last year
• neurorestore / DE-analysis
  ☆39Updated 3 years ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆23Updated 3 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆55Updated last year
• wenweixiong / MARVEL
  ☆49Updated 11 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• KChen-lab / METAFlux
  ☆68Updated last year
• wuaipinglab / ImmuCC
  Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
  ☆25Updated 3 years ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• interactivereport / RNASequest
  ☆18Updated 4 months ago
• ZilongZhang44 / single-cell-downstream-analysis
  Critical downstream analysis steps for single-cell RNA sequencing data
  ☆13Updated 4 years ago
• pathint / reoa
  Relative Expression Ordering Analysis (REOA) package
  ☆20Updated 2 years ago
• chensujun / scRNA
  ☆32Updated 3 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆24Updated 7 months ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 2 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆24Updated 11 months ago
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆17Updated 8 months ago