☆17Oct 3, 2023Updated 2 years ago
Alternatives and similar repositories for CPTAC_PanCan_PTM_2023
Users that are interested in CPTAC_PanCan_PTM_2023 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year
- ☆14Mar 28, 2025Updated last year
- ☆11May 12, 2021Updated 5 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Oct 29, 2021Updated 4 years ago
- ☆17May 30, 2022Updated 4 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- ☆23Jul 27, 2023Updated 3 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated 2 years ago
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 9 years ago
- ☆13Apr 16, 2026Updated 3 months ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆20Sep 29, 2021Updated 4 years ago
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- This repository contains the code used to analyze data for the Pan-disease Human Blood Atlas, a large-scale plasma proteomics resource co…☆17Aug 6, 2025Updated 11 months ago
- ☆26Dec 18, 2024Updated last year
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆23Jul 22, 2026Updated last week
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- The database and API backend for ZincBind - the database of zinc binding sites☆16Apr 8, 2025Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CoRAL: Reconstruction of focal amplifications with long reads☆31Updated this week
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆27May 8, 2022Updated 4 years ago
- An R package to time somatic mutations☆73Dec 12, 2020Updated 5 years ago
- Variant annotation and merging pipeline☆44Jul 22, 2025Updated last year
- PDV: an integrative proteomics data viewer☆66Jul 6, 2026Updated 3 weeks ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- ☆86Apr 17, 2025Updated last year
- ☆12May 4, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Oct 16, 2023Updated 2 years ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆14Aug 21, 2025Updated 11 months ago
- Network Reverse Engineering through AP inference of Mutual Information☆89Mar 6, 2023Updated 3 years ago
- ☆15Jan 27, 2022Updated 4 years ago
- ☆33Mar 23, 2026Updated 4 months ago
- ☆42Oct 12, 2018Updated 7 years ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year