Alternatives and similar repositories for CPTAC_PanCan_PTM_2023

Users that are interested in CPTAC_PanCan_PTM_2023 are comparing it to the libraries listed below

• dzhakparov / GeneSelectR
  ☆23Updated last year
• aertslab / scenicplus_analyses
  SCENIC+ analyses
  ☆17Updated 2 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• pathint / reoa
  Relative Expression Ordering Analysis (REOA) package
  ☆21Updated 3 years ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆24Updated 3 years ago
• interactivereport / RNASequest
  ☆18Updated 2 months ago
• XiDsLab / scFusion
  ☆21Updated 3 years ago
• guokai8 / rcellmarker
  Identify cell type based on cell markers for single cell squencing
  ☆11Updated last year
• pablo-gar / somatic_mutations_GTEx
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆16Updated 5 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 10 months ago
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆25Updated 11 months ago
• chensujun / scRNA
  ☆32Updated 4 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• JiaqiLiZju / Nvwa
  ☆36Updated 3 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆26Updated last year
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 5 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆24Updated 3 years ago
• quadbio / RNAseq_tutorial
  ☆33Updated last year
• CostaLab / scrna_seurat_pipeline
  comprehensive analysis of single-cell transcriptomics data
  ☆24Updated 7 months ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆22Updated last year
• braingeneers / SIMS
  SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
  ☆10Updated 2 months ago
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated last year
• bm2-lab / MUSIC
  model-based understanding of single-cell CRISPR screening
  ☆26Updated 11 months ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• p4rkerw / Muto_Wilson_NComm_2020
  Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
  ☆25Updated 2 years ago
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆18Updated 2 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆60Updated last year