Alternatives and similar repositories for SafFire

Users that are interested in SafFire are comparing it to the libraries listed below

• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆42Updated 11 months ago
• mrvollger / NucFreq
  ☆38Updated last month
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆46Updated 11 months ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆53Updated 5 months ago
• ablab / VerityMap
  ☆38Updated 2 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 6 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• maickrau / ribotin
  ☆36Updated 3 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• baozg / phased-assembly-check
  ☆31Updated 10 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated last week
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆35Updated 2 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆29Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆40Updated last year
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆37Updated last year
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆33Updated 6 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆33Updated this week
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆29Updated 5 months ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆31Updated 5 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆29Updated 7 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated last week
• kensung-lab / hypo-assembler
  ☆41Updated 6 months ago
• Maggi-Chen / Inspector
  A tool for evaluating long-read de novo assembly results
  ☆48Updated last year