mrvollger / SafFireLinks
☆29Updated 3 weeks ago
Alternatives and similar repositories for SafFire
Users that are interested in SafFire are comparing it to the libraries listed below
Sorting:
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 6 months ago
- ☆35Updated last year
- Statistics and analysis for variation graphs☆40Updated 5 months ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated this week
- ☆35Updated 2 years ago
- SV calling for diploid assemblies☆27Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- ☆29Updated 5 months ago
- ☆35Updated 2 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- A tool for evaluating long-read de novo assembly results☆35Updated 9 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Draw a dot plot from a paf alignment☆29Updated last month
- A genome assembly assessment pipeline.☆37Updated last year
- ☆30Updated 5 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆83Updated last week
- FastK based version of Merqury☆25Updated last week
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆21Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- TGS scaffolding☆46Updated 3 years ago