Tied Diffusion for Subnetwork Discovery (TieDIE)
☆37Dec 7, 2021Updated 4 years ago
Alternatives and similar repositories for TieDIE
Users that are interested in TieDIE are comparing it to the libraries listed below
Sorting:
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Oct 2, 2019Updated 6 years ago
- ☆12Sep 2, 2024Updated last year
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- Supercharged pandas indexing☆11Mar 28, 2021Updated 4 years ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆27Aug 23, 2022Updated 3 years ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- This repository contains course materials from JAX-BD2K workshop.☆32May 14, 2019Updated 6 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Materials for GCB535 at Penn.☆20Apr 19, 2019Updated 6 years ago
- viewtab, csvsql, and a range of utility classes for ML and data analysis.☆34Sep 21, 2022Updated 3 years ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆47Dec 14, 2025Updated 3 months ago
- Python Wrapper for FIt-SNE☆45May 11, 2021Updated 4 years ago
- The code for running the analysis component of CSI-Microbe☆12Jan 3, 2024Updated 2 years ago
- LaTeX templates for UCSC thesis and/or advancement (thesis proposal)☆16Dec 5, 2020Updated 5 years ago
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 3 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- ☆20Sep 26, 2025Updated 5 months ago
- Rank Aggregation Algorithms☆12Jul 22, 2014Updated 11 years ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆32May 1, 2025Updated 10 months ago
- ☆12Apr 26, 2020Updated 5 years ago
- Kernel k Nearest Neighbors in R☆17Feb 20, 2026Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆170Jan 26, 2024Updated 2 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Oct 4, 2018Updated 7 years ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 2 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆220Mar 9, 2026Updated last week
- Variational Auto-Encoder that generates synthetic gene expression data☆25Apr 7, 2023Updated 2 years ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- A visualization tool for Systems-Level Interactive Data Exploration☆12Jan 12, 2022Updated 4 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- ☆10Dec 29, 2021Updated 4 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Oct 18, 2024Updated last year
- ☆33Jul 17, 2021Updated 4 years ago
- Battenberg algorithm and associated implementation script☆53Oct 21, 2020Updated 5 years ago
- ☆13Jun 6, 2024Updated last year