Tied Diffusion for Subnetwork Discovery (TieDIE)
☆37Dec 7, 2021Updated 4 years ago
Alternatives and similar repositories for TieDIE
Users that are interested in TieDIE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Prediction IncluDinG INactives (**OLD VERSION**) NEW VERSION: https://github.com/lhm30/PIDGINv2)☆13Jun 15, 2017Updated 9 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Oct 2, 2019Updated 7 years ago
- ☆13Sep 2, 2024Updated 2 years ago
- Tools for munging genomic data☆21Jul 9, 2019Updated 7 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Python Wrapper for FIt-SNE☆46May 11, 2021Updated 5 years ago
- Epigenomic enrichment analysis of age-related genomic regions☆17Jun 4, 2026Updated 4 months ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Mar 31, 2023Updated 3 years ago
- ☆25Jul 9, 2025Updated last year
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated 2 years ago
- Scripts for analyses in the Griffin manuscript☆13Dec 14, 2022Updated 3 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Apr 30, 2017Updated 9 years ago
- This repository contains course materials from JAX-BD2K workshop.☆33May 14, 2019Updated 7 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Deep Learning package for Python☆25Apr 5, 2018Updated 8 years ago
- MCP server that connects Claude Code to a live PyMOL session over XML-RPC☆65Sep 2, 2026Updated last month
- Materials for GCB535 at Penn.☆21Apr 19, 2019Updated 7 years ago
- ggDoubleHeat: A heatmap-like visualization tool☆16Sep 21, 2026Updated 3 weeks ago
- NMF-mGPU web site:☆27May 2, 2015Updated 11 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆247May 23, 2020Updated 6 years ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆29Aug 23, 2022Updated 4 years ago
- LaTeX templates for UCSC thesis and/or advancement (thesis proposal)☆17Dec 5, 2020Updated 5 years ago
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆28Jun 21, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 4 years ago
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆84Jul 23, 2026Updated 2 months ago
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Rank Aggregation Algorithms☆13Jul 22, 2014Updated 12 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆179Jan 26, 2024Updated 2 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆89Oct 4, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Supporting Information of Publications☆14Mar 24, 2019Updated 7 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆232Jul 2, 2026Updated 3 months ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 3 years ago
- Kernel k Nearest Neighbors in R☆17Sep 1, 2026Updated last month
- Training and evaluating a variational autoencoder for pan-cancer gene expression data☆176Jan 31, 2019Updated 7 years ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆34May 1, 2025Updated last year
- Source code for integrative nonnegative matrix factorization☆20Jul 12, 2018Updated 8 years ago