ToolsVanBox / MutationalPatternsLinks
R package for extracting and visualizing mutational patterns in base substitution catalogues
☆9Updated last year
Alternatives and similar repositories for MutationalPatterns
Users that are interested in MutationalPatterns are comparing it to the libraries listed below
Sorting:
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆19Updated 2 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆40Updated 7 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Motif manipulation functions for R.☆28Updated 2 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆22Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆20Updated last year
- ☆23Updated 2 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- ☆49Updated 10 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆16Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆19Updated 5 months ago