ToolsVanBox / MutationalPatternsLinks
R package for extracting and visualizing mutational patterns in base substitution catalogues
☆9Updated last year
Alternatives and similar repositories for MutationalPatterns
Users that are interested in MutationalPatterns are comparing it to the libraries listed below
Sorting:
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- ☆25Updated last year
- ☆40Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- iread☆24Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.☆16Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆14Updated 10 years ago
- Git repo for CONIPHER tree building☆21Updated 2 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 11 months ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆19Updated last month
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- ☆20Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- mutSignatures R package - updated (dev) version - 2.1.4☆14Updated 2 years ago