Alternatives and similar repositories for talisman

Users that are interested in talisman are comparing it to the libraries listed below

• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated last week
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆33Updated last year
• MachineLearning-ELIXIR / dome-ml
  ☆21Updated 4 years ago
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated last month
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆47Updated last week
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated 2 weeks ago
• soumitag / SLIDE
  A visualization tool for Systems-Level Interactive Data Exploration
  ☆12Updated 3 years ago
• monarch-initiative / monarchr
  R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.
  ☆15Updated 2 weeks ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated this week
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated last year
• Edinburgh-Genome-Foundry / BandWagon
  🎺 Plot DNA digestion band patterns with Python
  ☆20Updated 3 months ago
• OBF / FALDO
  Feature Annotation Location Description Ontology
  ☆34Updated 5 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 5 months ago
• mpiersonsmela / SeqVerify
  Analyzes whole genome sequencing data for gene-editing verification
  ☆10Updated 4 months ago
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 4 years ago
• brentp / quicksect
  a cythonized, extended version of the interval search tree in bx
  ☆30Updated 6 years ago
• fastobo / fastobo-py
  Faultless AST for Open Biomedical Ontologies in Python.
  ☆30Updated 3 months ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆134Updated this week
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆31Updated 3 weeks ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• nextflow-io / hyperopt
  Nextflow pipeline for hyperparameter optimization of machine learning models
  ☆24Updated last year
• MBaysanLab / vcf-observer
  VCF Observer is a VCF file analysis, comparison, and visualization tool.
  ☆17Updated 8 months ago
• latch-verified / pathway
  Associate pathways + gene ontologies with significant genes.
  ☆10Updated 2 years ago
• arpcard / aro
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆20Updated 2 weeks ago
• nextflow-io / nf-gpt
  Experimental plugin to integrate GPT like prompt into Nextflow
  ☆15Updated last year
• steineggerlab / petasearch
  🧬 Efficient parallelized peta-scale protein database search
  ☆41Updated last year
• benchling / integration-examples
  Example usage of the Benchling API: https://docs.benchling.com/
  ☆35Updated 2 months ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• lcdb / lcdb-wf
  Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  ☆23Updated 2 weeks ago