Alternatives and similar repositories for emerald:

Users that are interested in emerald are comparing it to the libraries listed below

• RabbitBio / RabbitTClust
  RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
  ☆45Updated 8 months ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated this week
• PAiewsakun / GRAViTy
  ☆17Updated 2 years ago
• mbhall88 / NanoVarBench
  Evaluating Nanopore-based bacterial variant calling
  ☆16Updated 2 months ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆50Updated 7 months ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆33Updated last year
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆48Updated this week
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• pierrepeterlongo / back_to_sequences
  ☆41Updated 3 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated this week
• algbio / SRFAligner
  ☆13Updated last week
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆51Updated 3 years ago
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆18Updated 2 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆47Updated 2 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• moshi4 / pybarrnap
  Python implementation of barrnap (Bacterial ribosomal RNA predictor)
  ☆17Updated 3 weeks ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated this week
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆28Updated this week
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated last year
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 3 months ago
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated last week
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated 2 months ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆19Updated 4 years ago
• Sudaraka88 / LDWeaver
  Genomewide Epistasis Analysis on Bacteria
  ☆14Updated 5 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆48Updated 2 months ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆24Updated 3 years ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆27Updated 10 months ago