algbio / emeraldLinks
EMERALD calculates safety-windows by exploring the suboptimal alignment space
☆17Updated 3 weeks ago
Alternatives and similar repositories for emerald
Users that are interested in emerald are comparing it to the libraries listed below
Sorting:
- A new high-resolution long-read metagenome assembler for even noisy reads☆121Updated this week
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆46Updated 10 months ago
- Nail is an Alignment Inference tooL☆55Updated last week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆68Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆53Updated last week
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- ☆41Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 2 weeks ago
- ☆34Updated 4 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Updated 3 months ago
- Efficient calculation of phylogenetic distance matrices.☆49Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- PHANOTATE: a gene caller for phages.☆82Updated last year
- UFCG: Universal Fungal Core Genes☆35Updated 6 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆30Updated last week
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆97Updated 8 months ago
- Recombination-free trees☆63Updated 5 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Updated 3 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- Pan-Genomic Matching Statistics☆55Updated last year
- ☆25Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Updated 6 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Updated 2 years ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆141Updated 10 months ago