Alternatives and similar repositories for PTMPSI

Users that are interested in PTMPSI are comparing it to the libraries listed below

• LPDI-EPFL / rstoolbox
  Python Toolbox For Rosetta Silent Files Processing
  ☆16Updated 6 years ago
• willsheffler / worms
  Protein Origami via Genetic Fusions
  ☆13Updated 2 years ago
• ewbell94 / PEPPI
  Pipeline for protein-protein interaction prediction
  ☆23Updated 3 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last week
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆35Updated 3 months ago
• alirezaomidi / AFM-IDR
  Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"
  ☆16Updated 7 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• GodzikLab / FATCAT-dist
  ☆15Updated 2 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆53Updated 6 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆26Updated 4 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated this week
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆57Updated last month
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆28Updated last year
• JudeWells / chainsaw
  ☆41Updated 9 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆55Updated 3 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆17Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆21Updated last month
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated 2 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆22Updated last month
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated 9 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆46Updated 2 months ago
• JBEI / foldy
  Foldy: a web-based platform for interactive protein structure analysis
  ☆23Updated 4 months ago
• jtrinquier / SoftAlign
  ☆26Updated 2 weeks ago