ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.
☆17Jul 30, 2025Updated 7 months ago
Alternatives and similar repositories for ALLSorts
Users that are interested in ALLSorts are comparing it to the libraries listed below
Sorting:
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- ☆11May 12, 2021Updated 4 years ago
- Cancer circRNA identification pipeline with an ensemble approach☆18Dec 4, 2024Updated last year
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 4 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Nov 28, 2025Updated 3 months ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆21Jul 6, 2023Updated 2 years ago
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)☆31Dec 16, 2025Updated 2 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 3 years ago
- iread☆25Jul 16, 2021Updated 4 years ago
- Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)☆20Nov 28, 2024Updated last year
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- ☆25Aug 1, 2022Updated 3 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- Gene Fusion Visualiser☆51Jan 15, 2023Updated 3 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- ☆26Dec 4, 2019Updated 6 years ago
- ☆33May 2, 2022Updated 3 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated this week
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Jul 26, 2022Updated 3 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Jul 13, 2021Updated 4 years ago
- A high throughput automated drug discovery pipeline.☆29Mar 16, 2018Updated 7 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 8 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆35Oct 27, 2025Updated 4 months ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- ☆13May 27, 2025Updated 9 months ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Feb 19, 2026Updated last week
- ☆10Apr 22, 2024Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated last month
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆36Sep 8, 2025Updated 5 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 5 months ago
- ☆11Feb 11, 2023Updated 3 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- ☆11Feb 1, 2023Updated 3 years ago
- ☆13Feb 12, 2026Updated 3 weeks ago
- Repo for NYU's ITP "Quant Humanists: the 'I' in API" course☆16Apr 30, 2018Updated 7 years ago
- A CNN model to identify MEIs in WGS☆12Mar 4, 2025Updated last year
- ☆10Oct 18, 2021Updated 4 years ago