jfjlaros / demultiplexLinks
Versatile FASTA/FASTQ demultiplexer.
☆33Updated last year
Alternatives and similar repositories for demultiplex
Users that are interested in demultiplex are comparing it to the libraries listed below
Sorting:
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- ☆39Updated last month
- Builds a PEP from SRA or GEO accessions☆52Updated 3 weeks ago
- ☆20Updated 5 years ago
- Python package to annotate and visualize gene fusions.☆64Updated 10 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- ☆30Updated 7 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- ☆15Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Motif manipulation functions for R.☆30Updated 3 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆23Updated 4 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago