A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
☆50Oct 10, 2023Updated 2 years ago
Alternatives and similar repositories for DMRichR
Users that are interested in DMRichR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- ☆56Mar 9, 2022Updated 4 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆63May 9, 2025Updated last year
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated 10 months ago
- A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…☆18Mar 3, 2023Updated 3 years ago
- cfDNA cell type of origin estimation☆35Oct 19, 2023Updated 2 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- DCC/DAC methylation pipeline source☆56Jul 29, 2020Updated 5 years ago
- ☆16Jun 27, 2025Updated 11 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆449Updated this week
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆39May 30, 2026Updated last week
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 2 years ago
- Snakemake workflow for comparing E-G links to experimental data☆24May 27, 2026Updated 2 weeks ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- ☆16Oct 10, 2023Updated 2 years ago
- Tools and Data related to Enzymatic Methylation Sequencing☆35May 27, 2026Updated 2 weeks ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆179Jun 21, 2024Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆12Jun 2, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆57Mar 12, 2026Updated 2 months ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 3 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 4 years ago
- Human and mouse genome assemblies customized for rDNA mapping☆12Mar 7, 2025Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆192Apr 19, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 4 months ago
- ☆35May 20, 2026Updated 3 weeks ago
- ☆23Sep 21, 2021Updated 4 years ago
- R package for DNA methylation analysis☆254Jan 18, 2026Updated 4 months ago
- ☆11Oct 19, 2021Updated 4 years ago
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆40Mar 20, 2026Updated 2 months ago