ben-laufer / DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
☆43Updated last year
Alternatives and similar repositories for DMRichR:
Users that are interested in DMRichR are comparing it to the libraries listed below
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 6 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- An R interface to the MEME Suite☆50Updated 7 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆82Updated 10 months ago
- ☆58Updated 3 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 5 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- ☆49Updated 4 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆52Updated last week
- A toolkit for QC and visualization of ATAC-seq results.☆69Updated 4 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆40Updated last year
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆74Updated 9 months ago
- Tutorial Website☆59Updated 4 years ago
- Profiling of transcription factor binding sites in cell-free DNA☆25Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆44Updated last year
- A list of alternative splicing analysis resources☆43Updated last month
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 9 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆48Updated 6 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago