A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
☆49Oct 10, 2023Updated 2 years ago
Alternatives and similar repositories for DMRichR
Users that are interested in DMRichR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆63May 9, 2025Updated 10 months ago
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…☆16Mar 3, 2023Updated 3 years ago
- cfDNA cell type of origin estimation☆34Oct 19, 2023Updated 2 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- DCC/DAC methylation pipeline source☆56Jul 29, 2020Updated 5 years ago
- ☆16Jun 27, 2025Updated 9 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆445Aug 8, 2025Updated 7 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆36Mar 9, 2026Updated 3 weeks ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Snakemake workflow for comparing E-G links to experimental data☆23Mar 9, 2026Updated 2 weeks ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆21Oct 25, 2023Updated 2 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- ☆15Oct 10, 2023Updated 2 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆177Jun 21, 2024Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated 2 weeks ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆76Aug 18, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆55Mar 12, 2026Updated 2 weeks ago
- ☆22Jul 2, 2020Updated 5 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 10 months ago
- Human and mouse genome assemblies customized for rDNA mapping☆12Mar 7, 2025Updated last year
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 3 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆185Feb 24, 2026Updated last month
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- ☆33Updated this week
- ☆23Sep 21, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for DNA methylation analysis☆250Jan 18, 2026Updated 2 months ago
- ☆11Oct 19, 2021Updated 4 years ago
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆39Mar 20, 2026Updated last week
- Haplotype-aware assembly of complex regions and small genomes☆15Nov 21, 2025Updated 4 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Tools for analyzing DNA methylation data☆44Feb 15, 2026Updated last month
- ☆31May 29, 2014Updated 11 years ago