ben-laufer / DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
☆42Updated last year
Alternatives and similar repositories for DMRichR:
Users that are interested in DMRichR are comparing it to the libraries listed below
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- An R interface to the MEME Suite☆50Updated 5 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 3 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 5 months ago
- Full-length transcriptome splicing and mutation analysis☆81Updated 9 months ago
- ☆55Updated 3 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆40Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 2 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 3 months ago
- ☆30Updated 6 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆42Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 2 months ago
- Interactive multiscale visualization for structural variation in human genomes☆68Updated this week
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆58Updated this week
- Estimation of Promoter Activity from RNA-Seq data☆51Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆51Updated 3 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated 11 months ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆49Updated last week
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 2 months ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago