A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
☆50Oct 10, 2023Updated 3 years ago
Alternatives and similar repositories for DMRichR
Users that are interested in DMRichR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 4 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆67May 9, 2025Updated last year
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression☆12Jan 17, 2021Updated 5 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated last year
- Cluster-based analysis of CpG methylation☆12Jan 11, 2024Updated 2 years ago
- ☆60Mar 9, 2022Updated 4 years ago
- R package for DNA methylation analysis☆21Oct 2, 2026Updated last month
- A (mostly) universal methylation extractor for BS-seq experiments.☆181Oct 20, 2026Updated 3 weeks ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆41Oct 30, 2026Updated last week
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆199Apr 19, 2026Updated 6 months ago
- ☆10Jul 19, 2021Updated 5 years ago
- Write PubMed search results with two display options (citation or listview) to PDF or Word☆13Oct 18, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing…☆16Apr 5, 2022Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated this week
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆17Dec 10, 2019Updated 6 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- R package to impute methylation within WGBS using machine learning☆13Mar 9, 2023Updated 3 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆90May 23, 2026Updated 5 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…☆18Mar 3, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Sep 28, 2022Updated 4 years ago
- cfDNA cell type of origin estimation☆36Oct 19, 2023Updated 3 years ago
- DCC/DAC methylation pipeline source☆54Jul 29, 2020Updated 6 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 4 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆471Updated this week
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆58Mar 12, 2026Updated 7 months ago
- A flexible framework for nucleosome profiling of cell-free DNA☆10May 12, 2025Updated last year
- ☆11Apr 25, 2024Updated 2 years ago
- Tool to estimate purity of tumor samples exploiting DNA Methylation data☆13Nov 30, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 7 years ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆22Sep 3, 2026Updated 2 months ago
- An R for fast and flexible DNA methylation analysis☆36Jul 21, 2026Updated 3 months ago
- R package for DNA methylation analysis☆267Jul 15, 2026Updated 3 months ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆65Jun 22, 2025Updated last year
- Workshop • R Programming Foundations for Data Analysis • 5 days☆10Updated this week
Are these results useful?