A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
☆50Oct 10, 2023Updated 2 years ago
Alternatives and similar repositories for DMRichR
Users that are interested in DMRichR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 4 years ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- ☆59Mar 9, 2022Updated 4 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆64May 9, 2025Updated last year
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆41Updated this week
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated last year
- methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing…☆16Apr 5, 2022Updated 4 years ago
- Write PubMed search results with two display options (citation or listview) to PDF or Word☆13Oct 18, 2020Updated 5 years ago
- A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…☆18Mar 3, 2023Updated 3 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- cfDNA cell type of origin estimation☆35Oct 19, 2023Updated 2 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆457Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DCC/DAC methylation pipeline source☆56Jul 29, 2020Updated 6 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- ☆16Jun 27, 2025Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Sep 28, 2022Updated 3 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 2 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆181Jun 21, 2024Updated 2 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 3 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 31, 2026Updated last week
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- ☆22Jul 2, 2020Updated 6 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆58Mar 12, 2026Updated 4 months ago
- Haplotype-aware assembly of complex regions and small genomes☆15Aug 2, 2026Updated last week
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆196Apr 19, 2026Updated 3 months ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆13Jul 23, 2026Updated 2 weeks ago
- Human and mouse genome assemblies customized for rDNA mapping☆13Mar 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- ☆35Jul 17, 2026Updated 3 weeks ago
- R package for DNA methylation analysis☆260Jul 15, 2026Updated 3 weeks ago
- ☆12Oct 19, 2021Updated 4 years ago
- ☆23Sep 21, 2021Updated 4 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆19Jun 5, 2026Updated 2 months ago
- ☆16Jul 9, 2026Updated last month