IARCbioinfo / BAM-tricksLinks
Tip and tricks for BAM files
☆86Updated 7 years ago
Alternatives and similar repositories for BAM-tricks
Users that are interested in BAM-tricks are comparing it to the libraries listed below
Sorting:
- Relevant papers for CNV and SV approaches☆94Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 3 weeks ago
- BigWig and BAM utilities☆98Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆89Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 3 months ago
- Tools for analyzing DNA methylation data☆44Updated last week
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆74Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 6 months ago
- My bioinfo toolbox☆50Updated 9 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 4 months ago
- Allele-specific alignment sorting☆60Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆73Updated last month
- Toolkit for processing TAB-delimited format☆62Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆131Updated last year
- Powerful statistics for VCF files☆72Updated 4 months ago
- Somatic structural variant caller for long-read data☆83Updated this week
- GenMap - Fast and Exact Computation of Genome Mappability☆114Updated last year
- Learning the Variant Call Format☆147Updated 3 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago