dieterich-lab / JACUSA2Links
New version of JACUSA -> 2.0
☆30Updated 2 weeks ago
Alternatives and similar repositories for JACUSA2
Users that are interested in JACUSA2 are comparing it to the libraries listed below
Sorting:
- ☆60Updated 4 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- ☆64Updated 2 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆98Updated this week
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆49Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- HiC uniform processing pipeline☆62Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 9 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- A list of alternative splicing analysis resources☆46Updated 8 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 4 months ago
- Demultiplexes a fastq.☆48Updated 4 years ago
- ☆23Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago