dieterich-lab / JACUSA2
New version of JACUSA -> 2.0
☆24Updated 3 weeks ago
Alternatives and similar repositories for JACUSA2:
Users that are interested in JACUSA2 are comparing it to the libraries listed below
- ☆54Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 6 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated last week
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated 2 weeks ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 6 months ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆54Updated last month
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- ☆21Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆25Updated 5 years ago
- Error correction of ONT transcript reads☆59Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆33Updated 3 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆33Updated 2 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 10 months ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ☆11Updated 3 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 9 months ago
- bioinformatic pipeline for GLORI☆18Updated 8 months ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆63Updated 3 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Tools for analyzing DNA methylation data☆36Updated this week
- ☆58Updated 6 months ago
- A list of alternative splicing analysis resources☆41Updated 3 months ago
- Tutorial Website☆56Updated 4 years ago