New version of JACUSA -> 2.0
☆31Mar 6, 2026Updated last month
Alternatives and similar repositories for JACUSA2
Users that are interested in JACUSA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Jul 18, 2025Updated 9 months ago
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 9 months ago
- JAVA framework for accurate SNV assessment☆12Jun 28, 2021Updated 4 years ago
- RES-Scanner is a software package for genome-wide identification and annotation of RNA-editing sites for any species with matched RNA-Seq…☆12Jul 13, 2016Updated 9 years ago
- Alignment of RNAs☆26Jul 31, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆61Jul 17, 2025Updated 9 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆46Jan 8, 2026Updated 3 months ago
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 3 years ago
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 9 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44May 11, 2017Updated 8 years ago
- An introduction to the LSF Job Scheduler☆17Feb 26, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year
- bioinformatic pipeline for GLORI☆22Mar 30, 2026Updated 3 weeks ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Sep 2, 2025Updated 7 months ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Mar 21, 2026Updated 3 weeks ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 3 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 5 months ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Dec 15, 2023Updated 2 years ago
- Atac-seq QC matrix☆22Jun 4, 2024Updated last year
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bullseye analysis pipeline for DART-seq analysis☆15Feb 28, 2026Updated last month
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Sep 15, 2023Updated 2 years ago
- Base-conversion Sequencing Aligner☆14Nov 8, 2025Updated 5 months ago
- ☆16Feb 18, 2018Updated 8 years ago
- ☆21Aug 26, 2024Updated last year
- Complete analysis pipeline for PAR-CLIP data☆10May 7, 2015Updated 10 years ago
- SNP-free RNA editing Identification Toolkit☆48Jan 7, 2025Updated last year