lpryszcz / binLinks
My bioinfo toolbox
☆50Updated 4 months ago
Alternatives and similar repositories for bin
Users that are interested in bin are comparing it to the libraries listed below
Sorting:
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆67Updated 3 weeks ago
- mtDNA Variant Caller☆34Updated 6 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 8 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- Unsorted scripts for bioinformatics☆61Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- ☆58Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated 3 weeks ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 6 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆27Updated 4 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- TIDDIT - structural variant calling☆73Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- ☆49Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago