lpryszcz / bin
My bioinfo toolbox
☆50Updated last month
Alternatives and similar repositories for bin:
Users that are interested in bin are comparing it to the libraries listed below
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆138Updated 10 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Powerful statistics for VCF files☆69Updated last year
- Precision HLA typing from next-generation sequencing data☆64Updated this week
- mtDNA Variant Caller☆34Updated 3 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- TIDDIT - structural variant calling☆74Updated 2 weeks ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 5 months ago
- QDNAseq package for Bioconductor☆49Updated 8 months ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- ☆78Updated 11 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- ☆55Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Python programs for processing GFF3 files☆96Updated last year
- A small-RNA sequencing analysis pipeline☆80Updated last month
- Tools for the analysis of structural variation in genomes☆78Updated last year
- BigWig and BAM utilities☆95Updated last year