Alternatives and similar repositories for group-dia:

Users that are interested in group-dia are comparing it to the libraries listed below

• cctsou / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆11Updated 9 years ago
• compomics / denovogui
  Graphical user interface for de novo sequencing of tandem mass spectra
  ☆14Updated last year
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆53Updated 3 years ago
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 10 months ago
• zhengfj1994 / MRM-Ion_Pair_Finder
  Defined MRM transitions from untargeted metabolomics data
  ☆10Updated last year
• mhoopmann / mstoolkit
  Automatically exported from code.google.com/p/mstoolkit
  ☆27Updated last month
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆14Updated 2 years ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆40Updated 11 months ago
• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• WMBEdmands / compMS2Miner
  metabolite identification R-package for metabolomic high-resolution LC-MS datasets.
  ☆14Updated 8 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• Nesvilab / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆20Updated last year
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆18Updated this week
• vsegurar / DeepMSPeptide
  ☆16Updated 5 years ago
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆19Updated last year
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆11Updated last week
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆25Updated 2 weeks ago
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆42Updated 2 years ago
• computational-metabolomics / msPurity
  R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆16Updated 11 months ago
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆20Updated 2 weeks ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 3 years ago
• Roestlab / DIAlignR
  This is a R package for alignment of DIA mass-spec data
  ☆12Updated 4 years ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆46Updated last year
• PHOENIXcenter / deeprtalign
  a deep learning-based retention time alignment tool for large cohort LC-MS data analysis
  ☆12Updated last year
• eMetaboHUB / MS-CleanR
  ☆25Updated last year
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• jcapelladesto / geoRge
  geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics
  ☆10Updated 3 years ago
• gggraca / MetaboAnnotatoR
  Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets
  ☆12Updated 3 years ago