An easy-to-use and interactive web application for FragPipe
☆13Jul 28, 2025Updated 7 months ago
Alternatives and similar repositories for FragPipe-Analyst
Users that are interested in FragPipe-Analyst are comparing it to the libraries listed below
Sorting:
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Nov 6, 2025Updated 3 months ago
- MaxQuant and Perseus Bug Reporting☆11Mar 19, 2025Updated 11 months ago
- A diaPASEF spectrum-centric analysis tool☆13Dec 24, 2025Updated 2 months ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated 10 months ago
- PyCharm plugin to execute python code☆12Jul 29, 2025Updated 7 months ago
- A label free quantification tool.☆18Jan 13, 2026Updated last month
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Documentation is available here:☆24Dec 9, 2025Updated 2 months ago
- A tool for summarizing open search results☆16Dec 19, 2025Updated 2 months ago
- Paper collection about de novo peptide Sequening☆23Feb 5, 2025Updated last year
- Graphical user interface for the ThermoRawFileParser☆23Jul 5, 2024Updated last year
- PDV: an integrative proteomics data viewer☆61Feb 18, 2026Updated 2 weeks ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆28Jan 27, 2026Updated last month
- A cross-platform proteomics data analysis suite☆278Updated this week
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆28Oct 15, 2024Updated last year
- A collection of available Python tools for Proteomics analysis☆66Jan 31, 2026Updated last month
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆34Feb 20, 2026Updated last week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated 3 weeks ago
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- Biological Relationships - Biorels data preparation infrastructure for biology and drug discovery☆15May 19, 2025Updated 9 months ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆427Feb 5, 2026Updated last month
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆150Feb 24, 2026Updated last week
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆38Feb 10, 2026Updated 3 weeks ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Feb 17, 2026Updated 2 weeks ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated last month
- IPHOMED☆11Jun 11, 2025Updated 8 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 8 months ago
- ☆14Aug 16, 2024Updated last year
- ☆10Mar 2, 2021Updated 5 years ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆45Apr 1, 2025Updated 11 months ago
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆10Feb 17, 2026Updated 2 weeks ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Dec 15, 2023Updated 2 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆16Feb 22, 2026Updated last week
- Assembly and Annotation of the Human Immune Health Atlas☆20Aug 28, 2025Updated 6 months ago
- Pipeline for automatic processing and quality control of mass spectrometry data☆13Jan 30, 2025Updated last year
- An efficient tool for large-scale correlation network analysis☆14Dec 27, 2024Updated last year
- ☆20Feb 13, 2026Updated 2 weeks ago