PNNL-Comp-Mass-Spec / DeconTools

Related projects: ⓘ

• smith-chem-wisc / mzLib
  Library for mass spectrometry projects
  ☆26Updated last week
• dbaileychess / CSMSL
  C# Mass Spectrometry Library
  ☆34Updated 2 years ago
• MatteoLacki / opentims_bruker_bridge
  DLL and SO from Bruker.
  ☆12Updated 2 years ago
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆19Updated 2 months ago
• nathaniel-mahieu / mz.unity
  mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data
  ☆13Updated 8 years ago
• PNNL-Comp-Mass-Spec / Informed-Proteomics
  Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
  ☆29Updated last year
• MatteoLacki / timspy
  ☆16Updated 3 years ago
• mafreitas / tdf2mzml
  ☆25Updated 11 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆41Updated 11 months ago
• cwenger / Morpheus
  Morpheus mass spectrometry–based proteomics database search algorithm
  ☆17Updated last month
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 3 months ago
• zhengfj1994 / MRM-Ion_Pair_Finder
  Defined MRM transitions from untargeted metabolomics data
  ☆10Updated 10 months ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆19Updated 2 months ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆37Updated 2 weeks ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 3 years ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆43Updated 2 weeks ago
• mobiusklein / ms_deisotope
  A library for deisotoping and charge state deconvolution of complex mass spectra
  ☆33Updated 2 weeks ago
• kusterlab / universal_spectrum_explorer
  ☆14Updated 2 years ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• compomics / spectrum_similarity
  Scoring functions to compare MS/MS spectra
  ☆11Updated 7 years ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆52Updated this week
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆16Updated this week
• PNNL-Comp-Mass-Spec / Thermo-Raw-File-Reader
  .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
  ☆38Updated last week
• statisticalbiotechnology / diffacto
  ☆13Updated 6 months ago
• YuanyueLi / group-dia
  Group-DIA, a software for analyzing multiple DIA data files
  ☆12Updated 7 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆41Updated 2 weeks ago
• gtluu / timsconvert
  ☆29Updated this week
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆21Updated 9 months ago
• MannLabs / timsrust
  ☆22Updated 2 weeks ago