Alternatives and similar repositories for Metabopolis

Users that are interested in Metabopolis are comparing it to the libraries listed below

• vpalombo / PANEV
  PaNeV: an R package for a pathway-based network visualization
  ☆10Updated 3 months ago
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆17Updated last year
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆44Updated 4 months ago
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 7 months ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• SaccoPerfettoLab / SignalingProfiler
  SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.
  ☆15Updated last month
• rformassspectrometry / book
  R for Mass Spectrometry documentation
  ☆12Updated 2 weeks ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• IOR-Bioinformatics / PCSF
  ☆14Updated 6 years ago
• ecnuzdd / PhosMap
  A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data
  ☆13Updated 3 years ago
• biswapriyamisra / metabolomics
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Updated 5 years ago
• everest-castaneda / knext
  Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…
  ☆11Updated last year
• YuLab-SMU / meshes
  MeSH Enrichment and Semantic analyses
  ☆12Updated last month
• sysbio-curie / Neko
  This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.
  ☆16Updated 2 months ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆16Updated 2 months ago
• SingleR-inc / singler-py
  Python bindings for SingleR
  ☆12Updated 6 months ago
• keyes-timothy / tidytof
  An R package for analyzing high-dimensional cytometry data using the tidyverse.
  ☆19Updated last year
• CostelloLab / GSEA-InContext
  Gene Set Enrichment Analysis in Python
  ☆11Updated 7 years ago
• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 6 months ago
• Nextflow4Metabolomics / nextflow4ms-dial
  Nextflow-powered MS-DIAL
  ☆10Updated 10 months ago
• SofieVG / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆66Updated last year
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆26Updated 2 months ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆34Updated 8 months ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• ByrumLab / ProteoViz
  Interactive tool for Phosphoproteomics
  ☆13Updated 5 years ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 6 years ago
• b2slab / FELLA
  FELLA: an R package for Metabolomics data enrichment through diffusion
  ☆22Updated 4 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• UCLouvain-CBIO / scp
  Single cell proteomics data processing
  ☆29Updated last month
• cwieder / py-ssPA
  Single sample pathway analysis tools for omics data
  ☆13Updated last year