kirjner / GGS
This repository implements Gibbs sampling with Graph-based Smoothing
☆37Updated 8 months ago
Alternatives and similar repositories for GGS:
Users that are interested in GGS are comparing it to the libraries listed below
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆26Updated 2 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated last month
- ☆81Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆74Updated 7 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆54Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated 8 months ago
- Structure-conditioned masked language modeling for protein sequence design☆61Updated last year
- Code for humanization of antibody and nanobody☆35Updated 2 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆51Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆66Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆41Updated 2 months ago
- Efficient implementatin of ESM family.☆52Updated 3 weeks ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆31Updated 3 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated 11 months ago
- Aligning protein generative models with experimental fitness☆83Updated 4 months ago
- ☆66Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆37Updated 3 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆21Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆35Updated 3 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆17Updated 2 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆100Updated last month
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆71Updated 11 months ago
- ☆33Updated 5 months ago
- ☆34Updated last year
- ☆24Updated 2 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆65Updated last week
- Official repository of GENzyme☆41Updated 2 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆55Updated 9 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆88Updated 6 months ago