kirjner / GGSLinks
This repository implements Gibbs sampling with Graph-based Smoothing
☆40Updated last year
Alternatives and similar repositories for GGS
Users that are interested in GGS are comparing it to the libraries listed below
Sorting:
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆89Updated 6 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 4 months ago
- Aligning protein generative models with experimental fitness☆113Updated last month
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated 2 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆57Updated last year
- Code for humanization of antibody and nanobody☆65Updated 3 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- ☆65Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 6 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆52Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆40Updated 4 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆58Updated last month
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆34Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆37Updated 4 months ago
- ☆29Updated 11 months ago
- Official implementation of "Learning the language of protein structures"☆40Updated 5 months ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆53Updated 5 months ago
- Efficient implementatin of ESM family.☆77Updated 3 months ago
- Tool for modelling the CDRs of antibodies☆33Updated 3 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 6 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆34Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆127Updated last month