This repository implements Gibbs sampling with Graph-based Smoothing
☆42May 29, 2024Updated last year
Alternatives and similar repositories for GGS
Users that are interested in GGS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository is the official implementation of Bidirectional Learning for Offline Infinite-width Model-based Optimization (NeurIPS 202…☆14Jan 19, 2023Updated 3 years ago
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- ☆11Aug 26, 2024Updated last year
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repository for code and models for the paper "Extrapolative Controlled Sequence Generation via Iterative Refinement"☆16Mar 5, 2024Updated 2 years ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆21Apr 15, 2026Updated 2 weeks ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- ☆59Jul 22, 2025Updated 9 months ago
- ☆15May 29, 2024Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆120Apr 23, 2026Updated last week
- Protein representation and design under a single training scheme☆24Updated this week
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 5 months ago
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆32Mar 19, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Diffusion-based all-atom protein generative model.☆235Aug 27, 2025Updated 8 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆419Jul 3, 2023Updated 2 years ago
- ☆33Aug 12, 2024Updated last year
- ☆57Apr 15, 2026Updated 2 weeks ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)☆76May 19, 2024Updated last year
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 7 months ago
- ☆137Jun 3, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆11Dec 8, 2023Updated 2 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Feb 21, 2026Updated 2 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago
- ☆213Sep 24, 2024Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆37Dec 8, 2025Updated 4 months ago
- ☆78Feb 11, 2025Updated last year
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Template-based protein design with Raygun☆80Apr 12, 2026Updated 2 weeks ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆89Jun 23, 2024Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆167Aug 24, 2023Updated 2 years ago
- Code for "Multi-Objective GFlowNets"☆19Jul 12, 2023Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated 2 years ago
- Code for RL-DIF☆16Jun 24, 2025Updated 10 months ago