chao1224 / ProteinDT
A Text-guided Protein Design Framework, Nat Mach Intell 2025
☆51Updated last month
Alternatives and similar repositories for ProteinDT:
Users that are interested in ProteinDT are comparing it to the libraries listed below
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆86Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆91Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆39Updated last year
- Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"☆61Updated 9 months ago
- Code for 'On Pre-trained Language Models For Antibody'☆32Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆99Updated 9 months ago
- ☆62Updated this week
- A comprehensive repository dedicated to the collection and exploration of studies utilizing Large Language Models for molecular design, p…☆39Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆71Updated last year
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆50Updated last year
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆60Updated 6 months ago
- Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023☆36Updated 5 months ago
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆77Updated 9 months ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆62Updated 4 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 7 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆53Updated 6 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆23Updated last year
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆46Updated last year
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆92Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆48Updated this week
- ☆34Updated 11 months ago
- ☆39Updated 2 years ago
- Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.☆76Updated last month
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆57Updated 4 months ago
- Papers about Structure-based Drug Design (SBDD)☆92Updated 2 months ago
- Implementation for ICML 2024 paper "MolCRAFT: Structure-Based Drug Design in Continuous Parameter Space"☆82Updated 4 months ago
- This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).☆27Updated 4 months ago
- Code and Data for the paper: Multi-level Protein Structure Pre-training with Prompt Learning [ICLR 2023]☆33Updated last year
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆31Updated last month
- Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…☆36Updated 4 months ago