Alternatives and similar repositories for ReprogBERT:

Users that are interested in ReprogBERT are comparing it to the libraries listed below

• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated 5 months ago
• MattMcPartlon / protein-docking
  Code for "A Deep Learning Framework for Flexible Docking and Design"
  ☆16Updated 2 years ago
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆17Updated last year
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆34Updated 5 months ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 3 years ago
• eva-smorodina / antibody_developability
  ☆9Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆54Updated 8 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆29Updated 3 months ago
• adaptyvbio / ProtFill
  Inpainting protein sequence and structure
  ☆12Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆60Updated last month
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆32Updated 8 months ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆23Updated 4 months ago
• Merck / AbLEF
  Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction
  ☆10Updated 8 months ago
• Shen-Lab / CPAC
  [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction
  ☆13Updated 7 months ago
• ahaldane / Mi3-GPU
  ☆16Updated last month
• tyang816 / VenusREM
  Augmenting zero-shot mutant prediction by retrieval-based logits fusion.
  ☆32Updated last week
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated 9 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 2 months ago
• zzhangzzhang / pLMs-interpretability
  ☆26Updated 3 months ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆29Updated last year
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆32Updated last year
• StatPhysBio / protein_holography
  Code for holographic machine learning of proteins
  ☆20Updated 2 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆33Updated this week
• ratthachat / awesome-biochem-ai
  Curated list on Deep Transformers Applications on Biology and Chemistry
  ☆18Updated last year
• BioinfoMachineLearning / MULTICOM3
  The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…
  ☆28Updated last year
• strauchlab / scaffold_design
  ☆16Updated 10 months ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆23Updated 6 months ago
• csi-greifflab / developability_profiling
  ☆16Updated last week
• Gonglab-THU / EvoAI
  ☆17Updated 3 weeks ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆22Updated 4 months ago