Alternatives and similar repositories for ReprogBERT:

Users that are interested in ReprogBERT are comparing it to the libraries listed below

• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated 6 months ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆30Updated last year
• MattMcPartlon / protein-docking
  Code for "A Deep Learning Framework for Flexible Docking and Design"
  ☆16Updated 2 years ago
• zzhangzzhang / pLMs-interpretability
  ☆26Updated 4 months ago
• eva-smorodina / antibody_developability
  ☆9Updated 2 years ago
• Shen-Lab / CPAC
  [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction
  ☆13Updated 8 months ago
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆32Updated 9 months ago
• adaptyvbio / egfr_competition_1
  This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.
  ☆33Updated 2 months ago
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆18Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆54Updated 9 months ago
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆34Updated 6 months ago
• RosettaCommons / FvHallucinator
  ☆26Updated 2 years ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆48Updated this week
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆28Updated 10 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 7 months ago
• Minys233 / Dynaformer
  ☆29Updated 7 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆61Updated last month
• ratthachat / awesome-biochem-ai
  Curated list on Deep Transformers Applications on Biology and Chemistry
  ☆18Updated last year
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆29Updated 2 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆38Updated 2 years ago
• keiserlab / autofragdiff
  ☆25Updated 8 months ago
• Gonglab-THU / EvoAI
  ☆17Updated last month
• tyang816 / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion.
  ☆34Updated last month
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 3 years ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated 11 months ago
• samgoldman97 / enz-pred
  ☆17Updated 2 years ago
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆46Updated last year
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆44Updated 3 years ago
• BioinfoMachineLearning / MULTICOM3
  The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…
  ☆28Updated last year
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated 10 months ago