kimmo1019 / scDECLinks
Simultaneous deep generative modeling and clustering of single cell genomic data
☆32Updated 2 years ago
Alternatives and similar repositories for scDEC
Users that are interested in scDEC are comparing it to the libraries listed below
Sorting:
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- ☆50Updated 7 months ago
- scLearn：Learning for single cell assignment☆35Updated 10 months ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆31Updated 5 years ago
- ☆56Updated last year
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 5 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆62Updated 5 years ago
- ☆45Updated 3 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated 4 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- ☆12Updated 2 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- ☆16Updated 3 years ago
- Reproducing result from the paper☆34Updated 4 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆41Updated last year
- spatial transcriptome, single cell☆71Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated last year
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- ☆44Updated 3 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 4 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- ☆46Updated last year
- ☆33Updated 6 months ago
- ☆26Updated last year