kimmo1019 / scDECLinks
Simultaneous deep generative modeling and clustering of single cell genomic data
☆32Updated 2 years ago
Alternatives and similar repositories for scDEC
Users that are interested in scDEC are comparing it to the libraries listed below
Sorting:
- Imputation method for scRNA-seq based on low-rank approximation☆78Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 9 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated last month
- ☆31Updated 2 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- ☆55Updated last year
- Low-dimensional Projection of Single Cell Velocity☆27Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆119Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated this week
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated 2 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆54Updated 5 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Updated 5 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 4 years ago
- scLearn:Learning for single cell assignment☆35Updated 7 months ago
- ☆40Updated last week
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 5 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- ☆44Updated 3 years ago
- ☆49Updated 4 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- ☆47Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆75Updated 6 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year