Simultaneous deep generative modeling and clustering of single cell genomic data
☆33Nov 14, 2022Updated 3 years ago
Alternatives and similar repositories for scDEC
Users that are interested in scDEC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hi-C data super-resolution with generative adversarial networks☆15Jul 6, 2021Updated 4 years ago
- single-cell graph attentional clustering☆13Feb 10, 2022Updated 4 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 7 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- scDeepCluster for Single Cell RNA-seq data☆106Jul 10, 2024Updated last year
- Roundtrip: density estimation with deep generative neural networks☆65Apr 27, 2024Updated 2 years ago
- ☆19Dec 1, 2021Updated 4 years ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆11Nov 10, 2023Updated 2 years ago
- Single-cell RNA-seq clustering and annotation☆13Oct 26, 2020Updated 5 years ago
- Deep joint-leaning single-cell multi-omics model☆16Jun 27, 2022Updated 3 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Jan 30, 2023Updated 3 years ago
- Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network☆103Jun 26, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- scDCC: Single Cell Deep Constrained Clustering☆45Jul 10, 2024Updated last year
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Dec 12, 2018Updated 7 years ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆13Apr 21, 2021Updated 5 years ago
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆30Jul 20, 2020Updated 5 years ago
- ☆13Dec 15, 2021Updated 4 years ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆104Aug 23, 2023Updated 2 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Single-cell epigenomic data annotation via supervised non-linear embedding☆24Apr 14, 2022Updated 4 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆70Apr 22, 2026Updated last month
- Scalable Ultra-Sparse Bayesian PCA☆33Feb 13, 2024Updated 2 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- ☆28Nov 21, 2019Updated 6 years ago
- Single-Cell Clustering Assessment Framework☆110Oct 27, 2023Updated 2 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 3 months ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated last year
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 4 years ago
- scEntropy method and scEGMM framework☆18Oct 26, 2019Updated 6 years ago
- Single Cell Multi-omics deep clustering☆30Jul 1, 2025Updated 10 months ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆18May 13, 2026Updated last week
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆14May 8, 2026Updated 2 weeks ago