kimmo1019 / scDEC
Simultaneous deep generative modeling and clustering of single cell genomic data
☆32Updated 2 years ago
Alternatives and similar repositories for scDEC:
Users that are interested in scDEC are comparing it to the libraries listed below
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- ☆42Updated 3 weeks ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- ☆26Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆57Updated 11 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- scPred package for cell type prediction from scRNA-seq data☆87Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- scLearn：Learning for single cell assignment☆35Updated 3 months ago
- ☆29Updated last month
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated 3 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆56Updated 11 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated last month
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 5 months ago
- ☆53Updated 11 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆114Updated 7 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- ☆45Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆59Updated 2 years ago
- Low-dimensional Projection of Single Cell Velocity☆27Updated 2 years ago
- ☆46Updated 2 weeks ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30Updated 3 weeks ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- ☆25Updated 3 years ago