kimmo1019 / scDECLinks
Simultaneous deep generative modeling and clustering of single cell genomic data
☆32Updated 3 years ago
Alternatives and similar repositories for scDEC
Users that are interested in scDEC are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆31Updated 6 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Updated 7 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- ☆51Updated 10 months ago
- ☆47Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- ☆34Updated 9 months ago
- ☆47Updated 5 months ago
- ☆16Updated 3 years ago
- scLearn：Learning for single cell assignment☆35Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 5 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- ☆41Updated this week
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 4 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- ☆26Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated 2 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆58Updated 2 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆42Updated 5 months ago