linsalrob / SRA_MetadataLinks
Get, parse, and extract information from the SRA metadata files
☆45Updated 3 years ago
Alternatives and similar repositories for SRA_Metadata
Users that are interested in SRA_Metadata are comparing it to the libraries listed below
Sorting:
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- ☆35Updated 2 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated this week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- PHAST☆75Updated this week
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- convert various features into a GFF-like file for use in genome browsers☆72Updated 3 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A list of awesome awesomeness related to bioinformatics and associated fields☆41Updated 7 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- Fully automated generation of UCSC assembly hubs☆34Updated last year
- A reference viral database (RVDB)☆26Updated 6 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago