Get, parse, and extract information from the SRA metadata files
☆46Sep 20, 2022Updated 3 years ago
Alternatives and similar repositories for SRA_Metadata
Users that are interested in SRA_Metadata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 5 months ago
- ☆19Dec 6, 2022Updated 3 years ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆20Nov 29, 2025Updated 5 months ago
- More scalable dereplication for metagenome assembled genomes☆80Mar 8, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scripts for plotting figures and running analysis throughout the manuscript☆11Nov 2, 2021Updated 4 years ago
- ☆16Dec 8, 2025Updated 4 months ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Short Tandem Repeat disease loci resource☆29Updated this week
- ☆20Sep 19, 2025Updated 7 months ago
- RNA dependent RNA Polymerase Palmprint Analysis☆12Aug 1, 2024Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 3 months ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 8 months ago
- Compute N50/NG50 and auN/auNG☆33Oct 7, 2023Updated 2 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Jun 16, 2022Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated last month
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Updated this week
- Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein seq…☆19Oct 4, 2022Updated 3 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Feb 7, 2018Updated 8 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆32Apr 21, 2026Updated last week
- Unified Human Gut Virome Catalog☆42Nov 10, 2025Updated 5 months ago
- WtP: Phage identification via nextflow and docker or singularity☆105Mar 19, 2026Updated last month
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- ☆17Mar 11, 2024Updated 2 years ago
- Leveraging protein-language models for virtual screening☆22Jun 5, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆154Oct 2, 2025Updated 6 months ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 5 years ago
- K-mer substring space decomposition☆44Sep 1, 2025Updated 8 months ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- ☆34Oct 6, 2025Updated 6 months ago
- Just another minhash implementation.☆12Mar 12, 2026Updated last month
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 9 months ago