linsalrob / SRA_Metadata
Get, parse, and extract information from the SRA metadata files
☆38Updated 2 years ago
Alternatives and similar repositories for SRA_Metadata:
Users that are interested in SRA_Metadata are comparing it to the libraries listed below
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Error correction of ONT transcript reads☆59Updated last year
- Fully automated generation of UCSC assembly hubs☆34Updated 5 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆50Updated 3 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆26Updated this week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆32Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆63Updated 2 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 7 months ago
- Filter SAM file for soft and hard clipped alignments☆46Updated 9 months ago
- TIDDIT - structural variant calling☆74Updated last week
- A versatile toolkit for k-mers with taxonomic information☆77Updated 7 months ago
- ☆35Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆59Updated last year
- ☆25Updated 3 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- Simple pileup-based variant caller☆88Updated last month
- A reference viral database (RVDB)☆26Updated 6 years ago