BodenmillerGroup / ImagingWorkshop2023
Central repository for the Multiplexed Tissue Imaging Workshop 2023.
☆10Updated 2 years ago
Alternatives and similar repositories for ImagingWorkshop2023:
Users that are interested in ImagingWorkshop2023 are comparing it to the libraries listed below
- ☆30Updated last month
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆34Updated 10 months ago
- RA Synovial Single-cell Multimodal Cell Atlas☆13Updated last year
- Spatial Single-Cell Analysis Toolkit☆86Updated last week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆69Updated 2 years ago
- ☆50Updated 10 months ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆93Updated 2 weeks ago
- Spatial Cellular Estimator for Tumors☆51Updated last week
- ☆31Updated 2 months ago
- ☆23Updated 3 weeks ago
- An R package for handling and analysing imaging mass cytometry data☆24Updated 5 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- Spatial transcriptomics of heart tissue☆81Updated last year
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆45Updated 2 years ago
- ☆30Updated 3 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆129Updated 4 months ago
- R based workflow for multiplexed imaging data☆31Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆112Updated last week
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆45Updated 7 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆57Updated 4 months ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆36Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆68Updated last week