a-xavier / tapesLinks
TAPES : a Tool for Assessment and Prioritisation in Exome Studies
☆25Updated 3 months ago
Alternatives and similar repositories for tapes
Users that are interested in tapes are comparing it to the libraries listed below
Sorting:
- Burden testing against public controls☆50Updated last year
- CN-Learn☆30Updated 5 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- ☆46Updated 6 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 7 months ago
- ☆21Updated last month
- ☆54Updated 2 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated last month
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- ☆26Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆69Updated 2 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 3 months ago
- R package to work with ctDNA sequencing data☆45Updated 3 years ago
- ☆16Updated 4 years ago
- ☆23Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆17Updated 3 weeks ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆34Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- ☆39Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago