Alternatives and similar repositories for tapes:

Users that are interested in tapes are comparing it to the libraries listed below

• babelomics / SMAca
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆22Updated last year
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆40Updated 3 months ago
• RahmanTeam / DECoN
  ☆51Updated 2 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆32Updated 9 years ago
• pughlab / ConsensusCruncher
  ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…
  ☆20Updated 2 years ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆33Updated 3 years ago
• bioinformatics-IBCH / Comparison-study-of-germline-CNV-calling-tools
  ☆16Updated 3 years ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 2 years ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆30Updated last year
• girirajanlab / CN_Learn
  CN-Learn
  ☆29Updated 4 years ago
• ikalatskaya / ISOWN
  ☆45Updated 5 years ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆60Updated last year
• ArkingLab / MitoHPC
  ☆20Updated 9 months ago
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆37Updated 3 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated 10 months ago
• niu-lab / msisensor-ct
  Microsatellite instability (MSI) detection for cfDNA samples.
  ☆18Updated 3 years ago
• cphgeno / CNVbench
  Benchmarking of CNV calling tools
  ☆18Updated 5 years ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆66Updated 4 months ago
• slzhao / QC3
  QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
  ☆31Updated 8 years ago
• mccoy-lab / LD-PGTA
  Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…
  ☆16Updated 2 years ago
• vladsavelyev / bed_annotation
  Assign gene names to regions in a BED file
  ☆23Updated last year
• BoevaLab / ONCOCNV
  ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data
  ☆25Updated 2 years ago
• tsy19900929 / snpeffToMaf
  Converts snpeff annotations into MAF
  ☆10Updated 4 months ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆31Updated 3 years ago
• GeneDx / scramble
  ☆39Updated 8 months ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆34Updated last year
• molgenis / capice
  ☆23Updated last month
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆21Updated 5 months ago
• asntech / QDNAseq.hg38
  QDNAseq bin annotation for hg38
  ☆14Updated 2 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated last year