a-xavier / tapesLinks
TAPES : a Tool for Assessment and Prioritisation in Exome Studies
☆25Updated 3 months ago
Alternatives and similar repositories for tapes
Users that are interested in tapes are comparing it to the libraries listed below
Sorting:
- Burden testing against public controls☆50Updated last year
- CN-Learn☆30Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- ☆53Updated 2 years ago
- ☆46Updated 5 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated last week
- ⛏ HLA predictions from NGS shotgun data☆54Updated 3 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆21Updated 2 weeks ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- QDNAseq package for Bioconductor☆51Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- ☆23Updated last year
- ☆25Updated last year
- ☆14Updated last year
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Script to convert GTC/BPM files to VCF☆47Updated last year
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago