Leeariel / amuellerView external linksLinks
machine learning
☆16Aug 29, 2019Updated 6 years ago
Alternatives and similar repositories for amueller
Users that are interested in amueller are comparing it to the libraries listed below
Sorting:
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- MicrobeRX☆15Aug 11, 2025Updated 6 months ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 5 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 6 years ago
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆14Jan 2, 2018Updated 8 years ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated last year
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- ☆11Mar 11, 2025Updated 11 months ago
- ☆12Apr 21, 2016Updated 9 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated last year
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 3 months ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 2 months ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆13Mar 7, 2019Updated 6 years ago
- ☆16Mar 3, 2023Updated 2 years ago
- shotgun pipeline☆12Apr 3, 2019Updated 6 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated this week
- This is the source code for ARGs-OAP v2.0 construction☆12Aug 1, 2019Updated 6 years ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 3 months ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆16Apr 14, 2022Updated 3 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 5 years ago
- snapper☆13Jul 8, 2024Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Apr 29, 2022Updated 3 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- Tests for the equality of coefficients of variation from multiple groups☆13Feb 19, 2023Updated 2 years ago
- ☆15Jun 26, 2025Updated 7 months ago
- ☆18Oct 4, 2023Updated 2 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- ☆14Dec 1, 2023Updated 2 years ago
- ☆20Mar 29, 2022Updated 3 years ago
- ☆13Sep 4, 2017Updated 8 years ago