LabLaskin / MSI-self-supervised-clustering
Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
☆11Updated 2 years ago
Related projects: ⓘ
- A parser to read .imzML files with python☆32Updated last month
- Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)☆20Updated 2 months ago
- modular & open DIA search☆41Updated this week
- MS/MS prediction for peptides☆22Updated 3 years ago
- An open-source Python package to unify raw MS data accession and storage.☆16Updated this week
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆16Updated 7 years ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆30Updated 4 months ago
- EasyPQP: Simple library generation for OpenSWATH☆10Updated last month
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆15Updated this week
- Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data☆11Updated 2 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆43Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆37Updated this week
- ☆29Updated this week
- Python Implementation of the msiPL by Abdelmoula et al.☆26Updated 3 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆74Updated last month
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆24Updated last week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆52Updated this week
- Python framework for Deep Learning in Proteomics☆21Updated 2 weeks ago
- DLL and SO from Bruker.☆12Updated 2 years ago
- A collection of available Python tools for Proteomics analysis☆42Updated 5 years ago
- ☆16Updated 3 years ago
- Instrument Application Programming Interface☆41Updated 11 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆67Updated 2 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆37Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆32Updated last week
- Mass spectrometry imaging toolbox☆36Updated this week
- A collection of awesome lipidomics tools and resources☆11Updated 2 years ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆81Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆41Updated 2 weeks ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆21Updated 9 months ago