LabLaskin / MSI-self-supervised-clusteringLinks
Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
☆11Updated 4 years ago
Alternatives and similar repositories for MSI-self-supervised-clustering
Users that are interested in MSI-self-supervised-clustering are comparing it to the libraries listed below
Sorting:
- A parser to read .imzML files with python☆50Updated last year
- An open-source Python package to unify raw MS data accession and storage.☆31Updated this week
- modular & open DIA search☆100Updated this week
- Evaluating batch correction methods for image-based cell profiling☆15Updated 5 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Updated 7 months ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated 3 weeks ago
- Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)☆21Updated 2 weeks ago
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆20Updated 9 years ago
- MS/MS prediction for peptides☆24Updated 5 years ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆21Updated 3 weeks ago
- R Package for Systematic Optimization of Metabolomic Data Processing☆17Updated 10 months ago
- A collection of available Python tools for Proteomics analysis☆67Updated last week
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Updated 3 weeks ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Updated 9 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Updated this week
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆55Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆83Updated 2 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆53Updated this week
- Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.☆14Updated 4 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Updated 2 months ago
- DLL and SO from Bruker.☆12Updated 3 years ago
- ☆22Updated 4 years ago
- ☆16Updated 2 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆48Updated 3 weeks ago
- ☆13Updated 4 years ago
- ☆45Updated 10 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated last month
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆18Updated 2 years ago
- Streamlining Mass Spectrometry Data Visualization with Pandas☆21Updated this week
- Infrastructure of AlphaX ecosystem☆53Updated last week