Alternatives and similar repositories for MSI-self-supervised-clustering

Users that are interested in MSI-self-supervised-clustering are comparing it to the libraries listed below

• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆47Updated last year
• m2aia / m2aia
  Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
  ☆21Updated last week
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆29Updated last month
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 5 years ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆14Updated 4 months ago
• KhawlaSeddiki / 1D-MS_CumulativeLearningCNNs
  ☆13Updated 4 years ago
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆13Updated last week
• idrblab / NOREVA
  R Package for Systematic Optimization of Metabolomic Data Processing
  ☆17Updated 8 months ago
• alexandrovteam / pySM
  Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
  ☆20Updated 9 years ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆21Updated this week
• MatteoLacki / opentims_bruker_bridge
  DLL and SO from Bruker.
  ☆12Updated 3 years ago
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆55Updated this week
• MannLabs / alphadia
  modular & open DIA search
  ☆96Updated last week
• Noble-Lab / cascadia
  Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
  ☆26Updated last month
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 3 years ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆21Updated 2 weeks ago
• kuwisdelu / Cardinal
  Mass spectrometry imaging toolbox
  ☆66Updated last month
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆18Updated 2 years ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated last week
• rpeckner-broad / Specter
  Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics
  ☆18Updated 7 years ago
• OpenMS / streamlit-template
  ☆16Updated this week
• vsegurar / DeepMSPeptide
  ☆18Updated 6 years ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆50Updated 2 years ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated 6 months ago
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆35Updated 8 months ago
• eMetaboHUB / FragHub
  ☆14Updated 2 weeks ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆78Updated last month
• luyiyun / NormAE
  Batch effects removal method based on deep autoencoder and adversarial learning
  ☆24Updated 11 months ago
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆51Updated this week
• MannLabs / OmicLearn
  🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
  ☆39Updated last year