Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
☆142Aug 21, 2024Updated 2 years ago
Alternatives and similar repositories for regtools
Users that are interested in regtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SUPPA: Fast quantification of splicing and differential splicing☆307Nov 6, 2025Updated 11 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 6 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆236Jun 1, 2024Updated 2 years ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Genome data visualizations☆227Jan 10, 2026Updated 9 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 6 months ago
- ☆312Aug 10, 2026Updated 2 months ago
- Ultrafast GPU-enabled QTL mapper☆217Jun 29, 2025Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Define regions in the genome☆34Mar 3, 2022Updated 4 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆72Jan 31, 2024Updated 2 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13May 27, 2025Updated last year
- Repo for advertising and organizing VICC, CGC, CIViC, & ClinGen Somatic: Variant Curation & Coding Unconference/meeting activities☆10Jun 2, 2026Updated 4 months ago
- Lightweight and Fast; RNA-seq quantification at the event-level☆117May 9, 2025Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆109Sep 26, 2026Updated 2 weeks ago
- Comprehensive Human Expressed SequenceS☆20Jul 13, 2025Updated last year
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated last month
- Just the leafviz parts of Leafcutter☆16Apr 2, 2026Updated 6 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 11 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆58Jun 29, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated last month
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 6 months ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Feb 23, 2025Updated last year
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 3 years ago
- An R package for performing MultiSTAAR procedure in whole-genome sequencing studies☆12Nov 14, 2024Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆258Oct 2, 2026Updated last week
- ☆11Apr 20, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- reference-free transcriptome assembly for short and long reads☆112Mar 13, 2026Updated 6 months ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 10 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆115Apr 13, 2026Updated 5 months ago
- Transcript assembly and quantification for RNA-Seq☆533Aug 9, 2026Updated 2 months ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- Visualizing transcript structure and annotation using ggplot2☆171Aug 24, 2024Updated 2 years ago