Alternatives and similar repositories for serratus:

Users that are interested in serratus are comparing it to the libraries listed below

• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆372Updated last year
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆551Updated last month
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆216Updated 5 months ago
• broadinstitute / viral-ngs
  Viral genomics analysis pipelines
  ☆191Updated 4 months ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆343Updated last month
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆408Updated 4 months ago
• antismash / antismash
  antiSMASH
  ☆191Updated this week
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆325Updated last week
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆154Updated 2 weeks ago
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆272Updated 3 weeks ago
• bcgsc / abyss
  Assemble large genomes using short reads
  ☆313Updated 3 months ago
• chanzuckerberg / shasta
  [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
  ☆272Updated 2 years ago
• pangenome / pggb
  the pangenome graph builder
  ☆406Updated 2 weeks ago
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆427Updated last month
• ncbi / amr
  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…
  ☆282Updated this week
• cbg-ethz / V-pipe
  V-pipe is a pipeline designed for analysing NGS data of short viral genomes
  ☆134Updated 3 weeks ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆379Updated 2 weeks ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆374Updated 3 weeks ago
• neherlab / treetime
  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
  ☆233Updated 2 weeks ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆329Updated this week
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆137Updated last year
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆309Updated this week
• pinellolab / CRISPResso2
  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
  ☆288Updated this week
• zyxue / ncbitax2lin
  🐞 Convert NCBI taxonomy dump into lineages
  ☆142Updated 2 years ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆204Updated last week
• veg / hyphy
  HyPhy: Hypothesis testing using Phylogenies
  ☆225Updated 2 weeks ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆206Updated 2 years ago
• HadrienG / InSilicoSeq
  A sequencing simulator
  ☆191Updated 5 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆273Updated 3 months ago
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆247Updated last week