bioinfo-ut / GenomeTester4Links
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
☆33Updated 2 years ago
Alternatives and similar repositories for GenomeTester4
Users that are interested in GenomeTester4 are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆28Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- ☆51Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Structural variant caller☆55Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Merge transcriptome assemblies☆31Updated 9 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- A graph aligner☆29Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- ☆31Updated 3 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago