bioinfo-ut / GenomeTester4Links
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
☆33Updated 2 years ago
Alternatives and similar repositories for GenomeTester4
Users that are interested in GenomeTester4 are comparing it to the libraries listed below
Sorting:
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Adapters for trimming☆30Updated 6 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- ☆28Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆31Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Tools for finding mobile element insertions from single-end datasets☆23Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago