bioinfo-ut / GenomeTester4Links
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
☆34Updated 3 years ago
Alternatives and similar repositories for GenomeTester4
Users that are interested in GenomeTester4 are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 4 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆51Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Structural variant caller☆55Updated 4 years ago
- compare sequences to a shared root reference sequence.☆24Updated 4 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- ☆33Updated 3 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago