Alternatives and similar repositories for workstation:

Users that are interested in workstation are comparing it to the libraries listed below

• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated this week
• JaneliaSciComp / BigStitcher-Spark
  Running compute-intense parts of BigStitcher distributed
  ☆22Updated last week
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆34Updated last month
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆69Updated last week
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆46Updated this week
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆58Updated last year
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆80Updated this week
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆35Updated last year
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated last month
• bigdataviewer / bigdataviewer-core
  ImgLib2-based viewer for registered SPIM stacks and more
  ☆38Updated 2 months ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆52Updated 4 years ago
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆28Updated 2 weeks ago
• abcucberkeley / PetaKit5D
  ☆37Updated last month
• embl-cba / elastix-wrapper
  ☆13Updated last week
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆16Updated 3 months ago
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆27Updated this week
• bkntr / brainways
  Brainways
  ☆15Updated last month
• nel-lab / FIOLA
  ☆33Updated last year
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• yu-lab-vt / SynQuant
  A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.
  ☆14Updated 5 months ago
• JaneliaSciComp / VVDViewer
  3D/4D volumetric rendering of microscopy data
  ☆21Updated this week
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆12Updated last week
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆48Updated last week
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆13Updated last week
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• bigdataviewer / bigdataviewer-playground
  ☆19Updated 2 weeks ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated last year
• bigdataviewer / bigdataviewer-vistools
  Helpers to use BigDataViewer as a quick visualization tool in other projects.
  ☆25Updated 8 months ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 2 years ago
• LaboratoryOpticsBiosciences / FLUTE
  Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data
  ☆26Updated 2 months ago