ankilab / DeepD3Links
☆23Updated 3 months ago
Alternatives and similar repositories for DeepD3
Users that are interested in DeepD3 are comparing it to the libraries listed below
Sorting:
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- CloudReg☆11Updated last year
- Brainways☆22Updated 3 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆24Updated last week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- ☆18Updated 3 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆17Updated 3 weeks ago
- Tools for distributed alignment of massive images☆89Updated last week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆110Updated 2 months ago
- GPU-based 3D non-rigid volumetric registration☆41Updated 3 months ago
- ☆49Updated 3 weeks ago
- The ImageJ framework for quantification of neuronal anatomy☆53Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 7 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- ☆34Updated 6 months ago
- Live Mouse Tracker analysis☆33Updated last week
- ☆37Updated this week
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆55Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Standalone cellfinder cell detection algorithm☆20Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ☆45Updated 5 years ago
- Loading and saving of image data.☆10Updated last year
- Segmentation of anatomical structures in a common coordinate space☆34Updated last week
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆94Updated 4 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆140Updated last week