Alternatives and similar repositories for DeepD3

Users that are interested in DeepD3 are comparing it to the libraries listed below

• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆14Updated 2 years ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆89Updated 2 months ago
• bkntr / brainways
  Brainways
  ☆21Updated 2 months ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆24Updated 2 weeks ago
• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆41Updated 2 months ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• abcucberkeley / PetaKit5D
  ☆49Updated this week
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆52Updated last week
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆106Updated last month
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆54Updated last week
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆40Updated 6 months ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆15Updated 2 weeks ago
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆23Updated 4 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated last year
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated last year
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆20Updated last year
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆22Updated 6 months ago
• nickdelgrosso / ABBA-QuPath-RegistrationAnalysis
  A visualization app for 3D-registered data processed in ABBA and QuPath
  ☆20Updated 3 years ago
• bauerdavid / napari-nD-annotator
  ☆37Updated 2 months ago
• AllenCell / napari-allencell-segmenter
  A plugin that enables image segmentation provided by Allen Institute for Cell Science
  ☆17Updated last week
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆138Updated 2 weeks ago
• brainglobe / imio
  Loading and saving of image data.
  ☆10Updated last year
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆34Updated 2 weeks ago
• nel-lab / FIOLA
  ☆34Updated 6 months ago
• NICALab / SUPPORT
  Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
  ☆91Updated 3 months ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆58Updated 4 months ago