ankilab / DeepD3Links
☆23Updated 4 months ago
Alternatives and similar repositories for DeepD3
Users that are interested in DeepD3 are comparing it to the libraries listed below
Sorting:
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Tools for distributed alignment of massive images☆91Updated 3 weeks ago
- CloudReg☆11Updated last year
- ☆19Updated 3 years ago
- Brainways☆22Updated 4 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆27Updated this week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆112Updated 3 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated 3 weeks ago
- Standalone cellfinder cell detection algorithm☆20Updated 2 years ago
- ☆49Updated last month
- ☆46Updated 5 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Updated last month
- The framework for quantification of neuronal anatomy☆55Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated this week
- Segmentation of anatomical structures in a common coordinate space☆35Updated this week
- Loading and saving of image data.☆10Updated last year
- ☆20Updated 8 months ago
- 3D shape analysis using deep learning☆28Updated 3 months ago
- Stitching of large tiled datasets☆21Updated 9 months ago
- ☆37Updated last month
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- GPU-based 3D non-rigid volumetric registration☆41Updated 4 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ☆34Updated 7 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Create 3D/4D animations using a natural language-based syntax☆61Updated 7 months ago
- Process images using SimpleITK in napari☆23Updated 8 months ago