neurodata / brainlitLinks
Method container for computational neuroscience on brains.
☆29Updated 4 months ago
Alternatives and similar repositories for brainlit
Users that are interested in brainlit are comparing it to the libraries listed below
Sorting:
- CloudReg☆11Updated last year
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 9 months ago
- ☆12Updated last week
- Standalone cellfinder cell detection algorithm☆19Updated last year
- ☆18Updated 3 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- Segmentation of anatomical structures in a common coordinate space☆33Updated last week
- A Python interface to access neuroanatomical atlases☆155Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated 2 weeks ago
- Loading and saving of image data.☆10Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last week
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆15Updated 2 years ago
- Brainways☆18Updated 2 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Automated 3D cell detection in very large images☆216Updated last week
- ☆45Updated 5 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆50Updated 3 weeks ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆100Updated 3 weeks ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆49Updated this week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- ☆10Updated 2 years ago
- Anatomical space conventions made easy.☆10Updated 2 weeks ago
- Developing a Brain Atlas through Deep Learning☆53Updated 2 years ago
- GPU-based 3D non-rigid volumetric registration☆39Updated last month
- Python package providing mesoscale connectivity models for mouse.☆39Updated last year
- Analyze neuroscience data in the cloud☆18Updated 10 months ago