neurodata / brainlitLinks
Method container for computational neuroscience on brains.
☆29Updated 3 months ago
Alternatives and similar repositories for brainlit
Users that are interested in brainlit are comparing it to the libraries listed below
Sorting:
- CloudReg☆11Updated last year
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- ☆13Updated 2 months ago
- Segmentation of anatomical structures in a common coordinate space☆35Updated 2 weeks ago
- brainglobe.info website☆13Updated last week
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files☆27Updated 4 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆28Updated last week
- A Python interface to access neuroanatomical atlases☆170Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- Brainways☆22Updated 4 months ago
- Standalone cellfinder cell detection algorithm☆20Updated 2 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated 2 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- ☆34Updated 8 months ago
- Automated 3D cell detection in very large images☆223Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- GPU-based 3D non-rigid volumetric registration☆41Updated 4 months ago
- Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.☆51Updated last month
- Loading and saving of image data.☆10Updated last year
- A Python package for feature extraction of neural morphologies☆46Updated 3 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 5 months ago
- ☆18Updated 3 years ago
- Python package providing mesoscale connectivity models for mouse.☆39Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆33Updated last month
- Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …☆23Updated 2 years ago
- Browser-based NWB visualization and DANDI exploration☆62Updated last month
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆20Updated last month
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Updated 3 years ago