Alternatives and similar repositories for brainlit:

Users that are interested in brainlit are comparing it to the libraries listed below

• neurodata / CloudReg
  CloudReg
  ☆11Updated 11 months ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 4 months ago
• neurodata / ardent
  Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.
  ☆15Updated 4 years ago
• MetaCell / nwb-explorer
  NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
  ☆24Updated 2 weeks ago
• BlueBrain / Long-range-micro-connectome
  BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome
  ☆10Updated 2 years ago
• neurodata / ProgLearn
  NeuroData's package for exploring and using progressive learning algorithms
  ☆36Updated last week
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆37Updated last year
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆52Updated 4 years ago
• neurodata / m2g
  NeuroData's MRI to Graphs (m2g) - connectome estimation package and pipeline
  ☆64Updated 11 months ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated last year
• neurodata / graph-stats-book
  ☆26Updated last year
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆30Updated last week
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆19Updated 6 years ago
• INCF / neuroscience-data-structure
  Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …
  ☆21Updated last year
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆21Updated 10 months ago
• CAVEconnectome / nglui
  ☆10Updated last month
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated last week
• NeurodataWithoutBorders / nwb-schema
  Data format specification schema for the NWB neurophysiology data format
  ☆55Updated this week
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆29Updated this week
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆132Updated this week
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆14Updated 2 years ago
• AllenInstitute / ipfx
  computes intrinsic cell features from intracellular electrophysiology data
  ☆27Updated 4 months ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆21Updated last week
• AllenInstitute / mouse_connectivity_models
  Python package providing mesoscale connectivity models for mouse.
  ☆38Updated 11 months ago
• dPys / PyNets
  A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
  ☆123Updated last year
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆19Updated last year
• calebweinreb / SNUB
  ☆26Updated 8 months ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆135Updated this week
• ActiveBrainAtlas / MouseBrainAtlas
  A system for building mouse brain atlas from histology series
  ☆11Updated 4 years ago