pylattice / pyLattice
A python library for advanced lattice light-sheet image analysis
☆21Updated 4 years ago
Alternatives and similar repositories for pyLattice:
Users that are interested in pyLattice are comparing it to the libraries listed below
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 10 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- ☆38Updated this week
- python tools for BigDataViewer☆22Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 3 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 5 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 4 months ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- ☆29Updated last year
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated 2 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated last week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆83Updated this week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 3 weeks ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆46Updated 3 weeks ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆39Updated 5 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Browse your OMERO database from within napari.☆36Updated 2 weeks ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 weeks ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last week