ilastik / nature_methods_multicut_pipeline
☆20Updated 3 years ago
Alternatives and similar repositories for nature_methods_multicut_pipeline:
Users that are interested in nature_methods_multicut_pipeline are comparing it to the libraries listed below
- ☆18Updated 7 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆20Updated 4 months ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆53Updated last month
- Distributed segmentation for bio-image-analysis☆37Updated 8 months ago
- 🌈☆54Updated last year
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆12Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- MorphoFeatures code and data☆20Updated last year
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- The mutex watershed for image segmentation.☆67Updated 3 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Segmented anisotropic ssTEM dataset of neural tissue☆24Updated 11 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆13Updated 2 weeks ago
- ☆16Updated 8 years ago
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 4 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆68Updated 3 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆28Updated last week
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Updated 3 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆88Updated 2 weeks ago
- ☆25Updated 4 years ago