ilastik / nature_methods_multicut_pipeline
☆20Updated 4 years ago
Alternatives and similar repositories for nature_methods_multicut_pipeline:
Users that are interested in nature_methods_multicut_pipeline are comparing it to the libraries listed below
- ☆18Updated 7 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 5 months ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated 2 weeks ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Segmented anisotropic ssTEM dataset of neural tissue☆24Updated 11 years ago
- 🌈☆54Updated 3 weeks ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Distributed segmentation for bio-image-analysis☆37Updated 2 weeks ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆12Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆60Updated 5 years ago
- The mutex watershed for image segmentation.☆67Updated 3 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 4 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- Semi automated image analysis toolkit for Connectomics☆12Updated 5 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆12Updated 6 years ago
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆34Updated 2 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆29Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆24Updated 2 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- ☆37Updated last year
- MorphoFeatures code and data☆20Updated last year
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated 7 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- ☆16Updated 8 years ago