ilastik / nature_methods_multicut_pipelineLinks
☆21Updated 4 years ago
Alternatives and similar repositories for nature_methods_multicut_pipeline
Users that are interested in nature_methods_multicut_pipeline are comparing it to the libraries listed below
Sorting:
- ☆17Updated 7 years ago
- Deep Learning for EM Connectomics☆15Updated 3 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 2 weeks ago
- 🌈☆62Updated 6 months ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated this week
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆70Updated 2 years ago
- Distributed segmentation for bio-image-analysis☆39Updated 4 months ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆37Updated 3 weeks ago
- Joint training of denoising and segmentation.☆74Updated 2 years ago
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 4 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 5 years ago
- Interactive Segmentation of Nucleus☆66Updated 2 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆55Updated last year
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆51Updated last year
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆107Updated last week
- StarDist PyTorch☆47Updated 2 years ago
- official implementation of the PatchPerPix instance segmentation method☆34Updated 2 years ago
- CNN based segmentation codes☆48Updated 2 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago