ilastik / nature_methods_multicut_pipeline
☆19Updated 3 years ago
Alternatives and similar repositories for nature_methods_multicut_pipeline:
Users that are interested in nature_methods_multicut_pipeline are comparing it to the libraries listed below
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆51Updated this week
- Simple watershed and agglomeration library for affinity graphs.☆19Updated 3 months ago
- ☆18Updated 7 years ago
- Distributed segmentation for bio-image-analysis☆36Updated 7 months ago
- 🌈☆53Updated last year
- ☆16Updated 8 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆12Updated 3 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆65Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- The mutex watershed for image segmentation.☆64Updated 3 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Segmented anisotropic ssTEM dataset of neural tissue☆24Updated 11 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 6 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated last year
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆32Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆66Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 weeks ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 4 years ago
- ☆30Updated 3 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆19Updated last year
- ☆36Updated 11 months ago
- MorphoFeatures code and data☆20Updated last year
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆83Updated this week
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆26Updated this week
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆12Updated 5 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆44Updated 8 months ago