haesleinhuepf / napari-simpleitk-image-processing
Process images using SimpleITK in napari
☆19Updated 3 months ago
Alternatives and similar repositories for napari-simpleitk-image-processing:
Users that are interested in napari-simpleitk-image-processing are comparing it to the libraries listed below
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆25Updated 2 months ago
- Visualizing feature measurements on label images in napari☆10Updated 5 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated 8 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last month
- ☆20Updated last year
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- StarDist plugin for napari☆36Updated 4 months ago
- A self-supervised denoising algorithm.☆24Updated 9 months ago
- ☆20Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- A 3D interactivity toolbox for napari☆32Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆53Updated 2 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated last month
- ☆21Updated 4 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- ilastik plugin for napari☆13Updated 9 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 4 months ago
- ☆17Updated 2 years ago
- Use ImageJ functionality from napari☆25Updated 3 weeks ago
- ☆22Updated last month
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆22Updated last month
- ☆16Updated 2 years ago
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆15Updated 3 weeks ago
- python tools for BigDataViewer☆21Updated 2 weeks ago
- Gamified image segmentation quality estimation☆17Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month