janelia-cellmap / fibsem-toolsLinks
Tools for handling FIB-SEM data and annotations
☆21Updated 2 months ago
Alternatives and similar repositories for fibsem-tools
Users that are interested in fibsem-tools are comparing it to the libraries listed below
Sorting:
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆23Updated last month
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 3 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- Browse your OMERO database from within napari.☆37Updated this week
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- ☆12Updated last year
- A 3D interactivity toolbox for napari☆34Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated this week
- dask empowered fast4dreg☆11Updated 6 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- Multi-Object Tracker using Integer Linear Equations☆31Updated 2 months ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated last month
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 2 months ago
- A template repo used to make new napari plugins☆23Updated 3 weeks ago
- ☆49Updated last month
- ☆41Updated this week
- 1d plotting in napari-based canvas.☆26Updated this week
- Affinity based segmentation algorithms and tools☆10Updated 3 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last month
- Optimize image processing workflows in napari☆17Updated last month
- ☆33Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last week
- ☆10Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 8 months ago
- ☆23Updated 3 weeks ago