janelia-cellmap / fibsem-toolsLinks
Tools for handling FIB-SEM data and annotations
☆22Updated 4 months ago
Alternatives and similar repositories for fibsem-tools
Users that are interested in fibsem-tools are comparing it to the libraries listed below
Sorting:
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 6 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆24Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- Affinity based segmentation algorithms and tools☆10Updated 3 months ago
- ☆46Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- ☆32Updated last year
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 2 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated last week
- ☆13Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated 2 weeks ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- ☆39Updated 2 weeks ago
- dask empowered fast4dreg☆11Updated 9 months ago
- A 3D interactivity toolbox for napari☆37Updated last month
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 5 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated 3 weeks ago
- Multi-Object Tracker using Integer Linear Equations☆37Updated this week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- A template repo used to make new napari plugins☆26Updated 3 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated 2 weeks ago
- 1d plotting in napari-based canvas.☆26Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- ☆51Updated 3 months ago
- Optimize image processing workflows in napari☆18Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago