janelia-cellmap / fibsem-toolsLinks
Tools for handling FIB-SEM data and annotations
☆22Updated 8 months ago
Alternatives and similar repositories for fibsem-tools
Users that are interested in fibsem-tools are comparing it to the libraries listed below
Sorting:
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆24Updated this week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 9 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- dask empowered fast4dreg☆15Updated last year
- ☆36Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 4 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated 8 months ago
- Browse your OMERO database from within napari.☆39Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- 1d plotting in napari-based canvas.☆25Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 7 months ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated 2 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆34Updated this week
- Particle tracking by solving linear assignment problem.☆60Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 2 months ago
- ☆42Updated last week
- A napari plugin to view and edit metadata☆12Updated 2 years ago
- Dataset EXploration & Processing☆32Updated 2 years ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆34Updated 2 weeks ago
- ☆13Updated last year
- Optimize image processing workflows in napari☆17Updated 7 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- ☆49Updated 3 weeks ago
- ☆51Updated 7 months ago
- Annotate microscopy images for CNN classifier☆11Updated 3 years ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week