Tools for handling FIB-SEM data and annotations
☆21Apr 4, 2025Updated last year
Alternatives and similar repositories for fibsem-tools
Users that are interested in fibsem-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Mar 18, 2024Updated 2 years ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 3 months ago
- Block-wise task scheduling for large nD volumes.☆32Updated this week
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆34Aug 3, 2026Updated last week
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- Resources for Heinrich et al., 2021☆20May 28, 2021Updated 5 years ago
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆17Jun 20, 2023Updated 3 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Feb 17, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 weeks ago
- ☆10Aug 22, 2020Updated 5 years ago
- Block-wise operations for large nD volumes☆45Updated this week
- A portal for viewing FIB-SEM datasets☆13May 13, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Jun 20, 2025Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 4 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- ☆23Mar 26, 2021Updated 5 years ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 8 months ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated last year
- dask empowered fast4dreg☆17Mar 11, 2026Updated 5 months ago
- Browse, share, and publish OME-Zarr data☆29Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆116Updated this week
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆43Jun 7, 2026Updated 2 months ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Feb 15, 2022Updated 4 years ago
- A fully scalable robust image feature extraction library.☆29Updated this week
- DivNoising is an unsupervised denoising method to generate diverse denoised samples for any noisy input image. This repository contains t…☆46Apr 16, 2025Updated last year
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆255Aug 5, 2026Updated last week
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- Browse your OMERO database from within napari.☆40Aug 1, 2026Updated last week
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- A napari plugin to view and edit layer metadata☆13Updated this week
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 6 months ago
- ☆23May 1, 2025Updated last year
- A library to facilitate machine learning on multi-dimensional images.☆92Aug 3, 2026Updated last week
- Illustrations created by Henning Falk for the Zarr community☆48Jan 29, 2025Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆57May 1, 2025Updated last year