janelia-cellmap / fibsem-tools
Tools for handling FIB-SEM data and annotations
☆21Updated 6 months ago
Alternatives and similar repositories for fibsem-tools:
Users that are interested in fibsem-tools are comparing it to the libraries listed below
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆22Updated 7 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- Multi-Object Tracker using Integer Linear Equations☆30Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- A 3D interactivity toolbox for napari☆34Updated 4 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Updated 3 weeks ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 3 weeks ago
- A template repo used to make new napari plugins☆16Updated last week
- Process and analyze surfaces using vedo in napari.☆23Updated 10 months ago
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆12Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 6 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- MorphoFeatures code and data☆20Updated last year
- ☆12Updated last year
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Browse your OMERO database from within napari.☆36Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 2 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated this week
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated last month
- A napari plugin to view and edit metadata☆10Updated last year
- ☆29Updated last year
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆21Updated 5 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated last month
- Dataset EXploration & Processing☆32Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 6 months ago
- ☆23Updated 6 months ago