Tools for handling FIB-SEM data and annotations
☆22Apr 4, 2025Updated 11 months ago
Alternatives and similar repositories for fibsem-tools
Users that are interested in fibsem-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Mar 18, 2024Updated 2 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆31Mar 12, 2026Updated last week
- GPU-accelerated Image Processing library for C++☆16Updated this week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Sep 15, 2025Updated 6 months ago
- Block-wise task scheduling for large nD volumes.☆33Updated this week
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 10 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Feb 17, 2025Updated last year
- Resources for Heinrich et al., 2021☆19May 28, 2021Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- ☆10Aug 22, 2020Updated 5 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- ☆23Mar 26, 2021Updated 4 years ago
- A portal for viewing FIB-SEM datasets☆13Updated this week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆15Jun 20, 2023Updated 2 years ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆55Jun 20, 2025Updated 9 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 7 months ago
- Illustrations created by Henning Falk for the Zarr community☆45Jan 29, 2025Updated last year
- ☆112Updated this week
- DivNoising is an unsupervised denoising method to generate diverse denoised samples for any noisy input image. This repository contains t…☆44Apr 16, 2025Updated 11 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆227Updated this week
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated last month
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated 2 months ago
- A napari plugin to view and edit layer metadata☆13Updated this week
- ☆22May 1, 2025Updated 10 months ago
- A fully scalable robust image feature extraction library.☆28Updated this week
- A library to facilitate machine learning on multi-dimensional images.☆88Mar 2, 2026Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆56May 1, 2025Updated 10 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last week
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 2 years ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Dec 1, 2025Updated 3 months ago
- ☆14Jan 25, 2024Updated 2 years ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Feb 15, 2022Updated 4 years ago
- ☆17Oct 21, 2024Updated last year