3D/4D volumetric rendering of microscopy data
☆27Apr 15, 2026Updated last month
Alternatives and similar repositories for VVDViewer
Users that are interested in VVDViewer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GPU-accelerated Image Processing library for C++☆16May 4, 2026Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Apr 23, 2026Updated 3 weeks ago
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- Tools for distributed alignment of massive images☆95Apr 22, 2026Updated 3 weeks ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆20Apr 14, 2023Updated 3 years ago
- ☆15May 11, 2026Updated last week
- Rust implementation of the N5 "Not HDF5" tensor file system format☆17Dec 6, 2022Updated 3 years ago
- Fractal backend☆20Updated this week
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- This repository contains code used for the fly brain activity experiments☆18Apr 26, 2023Updated 3 years ago
- ☆23May 1, 2025Updated last year
- Storing and accessing large Julia array locally or in cloud storage without server.☆13Jan 29, 2022Updated 4 years ago
- python tools for BigDataViewer☆23Dec 29, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Running compute-intense parts of BigStitcher distributed☆30Updated this week
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆70Updated this week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52May 11, 2026Updated last week
- Exercise repository for the "Deep Learning for Microscopy Image Analysis" course at the MBL.☆10Aug 31, 2022Updated 3 years ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Apr 24, 2026Updated 3 weeks ago
- R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.☆17Feb 3, 2026Updated 3 months ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of useful python utilities from True North Intelligent Algorithms☆46Updated this week
- Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.☆35Mar 22, 2026Updated last month
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆38Updated this week
- Notebooks for VoidSeg☆17Feb 10, 2020Updated 6 years ago
- Docsify plugin to work with namespaces☆12Jun 7, 2021Updated 4 years ago
- convert between Z-order, Cartesian, and quadtree/octree coordinates☆23Aug 3, 2022Updated 3 years ago
- Render transformed image tiles☆36May 7, 2026Updated last week
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- Illustrations created by Henning Falk for the Zarr community☆47Jan 29, 2025Updated last year
- ☆44Updated this week
- FluoRender is an interactive tool for fluorescence microscopy data visualization and analysis☆48May 10, 2026Updated last week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆95May 13, 2026Updated last week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 8 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year