Alternatives and similar repositories for pyflow

Users that are interested in pyflow are comparing it to the libraries listed below

• cgat-developers / ruffus
  CGAT-ruffus is a lightweight python module for running computational pipelines
  ☆174Updated 4 years ago
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆189Updated last week
• Mizzou-CBMI / COSMOS2
  Python Scientific Pipeline Management System
  ☆71Updated 2 years ago
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 6 years ago
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆74Updated 4 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• Novartis / yap
  High throughput, pain-free big data pipelines.
  ☆30Updated 8 years ago
• ga4gh / task-execution-schemas
  ☆89Updated 2 months ago
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated 5 months ago
• refinery-platform / refinery-platform
  The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …
  ☆104Updated 2 years ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆87Updated 7 years ago
• eaton-lab / toytree
  A minimalist tree plotting library using toyplot graphs
  ☆177Updated 4 months ago
• ODiogoSilva / TriFusion
  Streamlining phylogenomic data gathering, processing and visualization
  ☆88Updated 6 years ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 5 years ago
• cjlee112 / pygr
  Python graph database framework for bioinformatics
  ☆93Updated 3 years ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆68Updated last year
• rabix / benten
  A language server for Common Workflow Language
  ☆65Updated last year
• brentp / cruzdb
  python access to UCSC genomes database
  ☆136Updated 4 years ago
• counsyl / stor
  A cross-compatible CLI and Python API for accessing block and object storage
  ☆35Updated last year
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last week
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• bihealth / vcfpy
  Python 3 library with good support for both reading and writing VCF
  ☆110Updated last year
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• dib-lab / screed
  a simple read-only sequence database, designed for short reads
  ☆66Updated last year
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆145Updated 2 years ago
• roryk / ipython-cluster-helper
  Tool to easily start up an IPython cluster on different schedulers.
  ☆146Updated 5 years ago
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆24Updated 10 years ago
• hammerlab / cycledash
  Variant Caller Analysis Dashboard and Data Management System
  ☆36Updated 9 years ago