Alternatives and similar repositories for pyflow:

Users that are interested in pyflow are comparing it to the libraries listed below

• cgat-developers / ruffus
  CGAT-ruffus is a lightweight python module for running computational pipelines
  ☆174Updated 3 years ago
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆188Updated last week
• Mizzou-CBMI / COSMOS2
  Python Scientific Pipeline Management System
  ☆71Updated last year
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated 2 months ago
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 6 years ago
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆67Updated 8 months ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 2 years ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 4 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 8 months ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 7 years ago
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆74Updated 4 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆72Updated 10 months ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated 2 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆61Updated 6 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 4 years ago
• sequencing / isaac_aligner
  Isaac Genome Alignment Software
  ☆36Updated 10 years ago
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆125Updated this week
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 7 months ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• common-workflow-library / legacy
  Deprecated
  ☆100Updated 5 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 9 months ago
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 9 months ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• jamescasbon / PyVCF
  A Variant Call Format reader for Python.
  ☆411Updated last year
• roryk / ipython-cluster-helper
  Tool to easily start up an IPython cluster on different schedulers.
  ☆147Updated 4 years ago
• jdoughertyii / PyVCF
  A Variant Call Format reader for Python.
  ☆76Updated 10 years ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆99Updated 3 weeks ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆87Updated 7 years ago