C++ Library to parse Illumina InterOp files
☆82Apr 20, 2026Updated last month
Alternatives and similar repositories for interop
Users that are interested in interop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python interface to the GenoLogics LIMS server via its REST API.☆11Mar 30, 2022Updated 4 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Nov 27, 2025Updated 5 months ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Aligner for sequencing data☆18Apr 20, 2026Updated last month
- collection of data structures and algorithms☆19Mar 19, 2019Updated 7 years ago
- Aligner for sequencing data☆21Apr 20, 2026Updated last month
- The nimble & robust variant annotator☆196Apr 20, 2026Updated last month
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated last month
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated last month
- This repository contains a list of tools or methods that have been used in GIAB analysis☆29Nov 15, 2019Updated 6 years ago
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Aug 10, 2017Updated 8 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆314Apr 24, 2026Updated last month
- DSRC - DNA Sequence Reads Compressor☆60May 20, 2022Updated 4 years ago
- Structural variant and indel caller for mapped sequencing data☆465Oct 11, 2025Updated 7 months ago
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆122May 11, 2026Updated 2 weeks ago
- A lightweight parallel task engine☆148Jul 1, 2020Updated 5 years ago
- A tool for estimating repeat sizes☆210Jan 30, 2024Updated 2 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated last month
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Oct 31, 2017Updated 8 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Apr 16, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated 11 months ago
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated 9 months ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 4 years ago
- Simple FASTQ quality assessment using Python☆109Feb 24, 2026Updated 3 months ago
- use the noise☆15Apr 15, 2020Updated 6 years ago
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Jan 4, 2024Updated 2 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated last year
- Parse Illumina sample sheets with Python☆50Mar 20, 2024Updated 2 years ago
- NEAT read simulation tools☆101Jun 22, 2022Updated 3 years ago
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- Scripts to visualize the thumbnail images from illumina sequencing machines☆14Mar 16, 2016Updated 10 years ago