Illumina / interop
C++ Library to parse Illumina InterOp files
☆75Updated 6 months ago
Alternatives and similar repositories for interop:
Users that are interested in interop are comparing it to the libraries listed below
- A tool set for short variant discovery in genetic sequence data.☆194Updated 3 years ago
- ABRA2☆92Updated 2 years ago
- Bayesian genotyper for structural variants☆127Updated 3 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆81Updated 3 months ago
- ☆82Updated 6 years ago
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- VarDict☆191Updated last year
- A collection of reusable WDL tasks. Category:Other☆85Updated last week
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- ☆94Updated 2 years ago
- Small utilities for working with fastq sequence files.☆115Updated 2 years ago
- Platypus Variant Caller☆105Updated 6 months ago
- Tools for early stage alignment file processing☆93Updated 5 years ago
- Read visualizer for structural variants☆81Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆227Updated 3 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 7 months ago
- Gene fusion detection and visualization☆119Updated 2 years ago
- Structural variation and indel detection by local assembly☆239Updated last month
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆78Updated last month
- Graph realignment tools for structural variants☆156Updated 2 years ago
- NEAT read simulation tools☆97Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆102Updated 4 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆154Updated 4 months ago