Illumina / interopLinks
C++ Library to parse Illumina InterOp files
☆79Updated 4 months ago
Alternatives and similar repositories for interop
Users that are interested in interop are comparing it to the libraries listed below
Sorting:
- ABRA2☆93Updated 2 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- The nimble & robust variant annotator☆185Updated last year
- ☆95Updated 3 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated 2 weeks ago
- ☆82Updated 6 years ago
- Platypus Variant Caller☆108Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆171Updated last year
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆109Updated 4 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 10 months ago
- A collection of reusable WDL tasks. Category:Other☆88Updated 2 months ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- ☆91Updated 3 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated last month
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago