Alternatives and similar repositories for interop:

Users that are interested in interop are comparing it to the libraries listed below

• mozack / abra2
  ABRA2
  ☆92Updated 2 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆196Updated 3 years ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆101Updated 4 years ago
• relipmoc / skewer
  ☆94Updated 2 years ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆97Updated 11 months ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆83Updated 6 months ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆131Updated 4 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆82Updated 6 years ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆74Updated 5 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆198Updated last year
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆93Updated 6 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆79Updated last week
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆96Updated 5 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆108Updated 4 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated 9 months ago
• mozack / abra
  Assembly Based ReAligner
  ☆73Updated 6 years ago
• ryanlayer / stix
  Structural Variant Index
  ☆72Updated 4 months ago
• statgen / bamUtil
  ☆89Updated 3 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆79Updated 3 months ago
• RCollins13 / CNView
  Visualization and annotation of CNVs from population-scale whole-genome sequencing data
  ☆71Updated 7 years ago
• walaj / SeqLib
  C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  ☆137Updated 8 months ago
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆176Updated 11 months ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆105Updated 4 years ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆154Updated 2 years ago
• imgag / ClinCNV
  Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
  ☆85Updated 2 months ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆98Updated 2 years ago
• genome / breakdancer
  SV detection from paired end reads mapping
  ☆117Updated 5 years ago
• gatk-workflows / gatk4-germline-snps-indels
  Workflows for germline short variant discovery with GATK4
  ☆134Updated 3 years ago