A napari plugin for counting organoids from brightfield microscopy images with deep learning
☆15Aug 21, 2026Updated last month
Alternatives and similar repositories for napari-organoid-counter
Users that are interested in napari-organoid-counter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Develop custom oligo design pipelines.☆29Updated this week
- A flexible template, as a quick setup for deep learning projects in pytorch-lightning☆48Oct 26, 2023Updated 2 years ago
- Explainability for Random Forest Models.☆34May 17, 2026Updated 5 months ago
- Propulate is an asynchronous population-based optimization algorithm and software package for global optimization and hyperparameter sear…☆46Updated this week
- Web Interface for Wind Speed Prediction☆18Apr 17, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Perun is a Python package that measures the energy consumption of your applications.☆95Oct 8, 2026Updated last week
- blob loss example implementation☆37Aug 3, 2024Updated 2 years ago
- Distributed tensors and Machine Learning framework with GPU and MPI acceleration in Python☆251Updated this week
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆107Sep 23, 2025Updated last year
- BrainLes tutotrials☆11May 7, 2026Updated 5 months ago
- preprocessing tools for multi-modal 3D brain imaging☆39Updated this week
- A GUI based on napari for counting cells automatically in cell migration experiments☆46Nov 21, 2022Updated 3 years ago
- A python package for semi-structured deep distributional regression☆23Dec 9, 2022Updated 3 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 3 years ago
- #ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720☆11May 24, 2023Updated 3 years ago
- ☆12Feb 23, 2026Updated 7 months ago
- Repo for a workshops and presentations about ROS2 and Python☆12Oct 9, 2026Updated last week
- ☆14Jan 26, 2021Updated 5 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- The github repository for our paper SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analy…☆12Sep 7, 2023Updated 3 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆19Oct 7, 2026Updated last week
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆18Nov 10, 2022Updated 3 years ago
- ☆20Sep 17, 2026Updated last month
- Latex beamer slide template for Helmholtz AI☆16Oct 9, 2023Updated 3 years ago
- Tensorflow and Pytorch Version of Malis Loss☆17Nov 8, 2020Updated 5 years ago
- Scientific Dataset Quality Control and Data Exploration Tool☆29Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆25Oct 5, 2026Updated last week
- A plugin for LLM that enables proper plugin management when installed via uv tool☆35Jul 26, 2026Updated 2 months ago
- 1197 Dandisets (1.2 PB of the archive's 2.4 PB; 4 mirrors outdated, 1.2 PB behind: 001412, 000571, 001697, ...). DataLad super-dataset o…☆15Oct 5, 2026Updated last week
- a tool for using surfaces to explore volumetric data in napari☆22Jun 13, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- IsUMap is a tool for manifold learning, dimension reduction and data visualization☆24Jan 30, 2026Updated 8 months ago
- Ischemic stroke segmentation tool.☆96Apr 16, 2026Updated 6 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆26Jun 3, 2026Updated 4 months ago
- ☆21Apr 1, 2024Updated 2 years ago
- A self-supervised denoising algorithm.☆31Oct 5, 2026Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated 2 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆98May 15, 2026Updated 5 months ago