spatkar94 / HistoTMELinks
Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)
☆22Updated 3 months ago
Alternatives and similar repositories for HistoTME
Users that are interested in HistoTME are comparing it to the libraries listed below
Sorting:
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆44Updated 10 months ago
- ☆74Updated 5 months ago
- A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…☆37Updated 10 months ago
- GrandQC tool for tissue detection and quality control in pathology☆70Updated 7 months ago
- PyTorch implementation of HisToGene☆42Updated 3 years ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆43Updated 5 months ago
- ☆56Updated 2 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆72Updated 8 months ago
- ☆106Updated 4 months ago
- Deep learning on histopathology images.☆132Updated 4 years ago
- MOMA☆53Updated last year
- ☆46Updated 3 years ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆80Updated last year
- TCGA Pathology Reports in Machine Readable Text☆52Updated last year
- ☆45Updated 7 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆108Updated last year
- machine-readable information for the TCGA dataset, mirrored from other sources☆21Updated 3 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆32Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆83Updated last year
- ☆20Updated 2 years ago
- [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…☆24Updated 2 years ago
- Code from Foersch et al. (Under Construction / Development)☆37Updated 2 years ago
- ☆34Updated 2 years ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆96Updated 8 months ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆51Updated last year
- A vision language model for gigapixel whole slide images in histopathology☆79Updated last month
- Solid Tumor Associative Modeling in Pathology☆92Updated this week
- Scripts for data processing☆48Updated last year
- Accurate encoding of histologic images into StyleGAN space for discovery and explainability☆13Updated 3 weeks ago
- A generative toolkit to translate H&E images to multiplexed IHC☆54Updated 10 months ago