Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)
☆36Nov 24, 2025Updated 8 months ago
Alternatives and similar repositories for HistoTME
Users that are interested in HistoTME are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆46Feb 23, 2025Updated last year
- ☆20Oct 28, 2025Updated 9 months ago
- ☆39Mar 30, 2026Updated 4 months ago
- ☆71Feb 11, 2026Updated 6 months ago
- Toolkit for large-scale whole-slide image processing.☆616Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆81Feb 4, 2025Updated last year
- PyTorch implementation of HisToGene☆58Nov 30, 2021Updated 4 years ago
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆92Updated this week
- A generative toolkit to translate H&E images to multiplexed IHC☆69Dec 11, 2024Updated last year
- ☆31Mar 15, 2024Updated 2 years ago
- ☆15Nov 25, 2025Updated 8 months ago
- Gene Expression Prediction from Histology Images via Hypergraph Neural Networks☆18May 19, 2025Updated last year
- Repository in Support of EAGLE Submission☆28Oct 11, 2025Updated 10 months ago
- ☆22Feb 5, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- [MICCAI 2024]Official implementation of "Pathological Semantics-Preserving Learning for H&E-to-IHC Virtual Staining"☆42Apr 22, 2026Updated 3 months ago
- 肿瘤相关的数据集,包括但不限于影像、病理、细胞学、预后、多组学病理数据 【Oncology-related datasets, including but not limited to medical imaging, pathology, cytology, progno…☆14Jan 27, 2026Updated 6 months ago
- STAIG: Spatial Transcriptomics Analysis via Image-Aided Graph Contrastive Learning for Deciphering and Alignment-Free Integration☆21Mar 31, 2025Updated last year
- Solid Tumor Associative Modeling in Pathology☆126Jul 7, 2026Updated last month
- ☆19Mar 30, 2025Updated last year
- ☆21Jun 3, 2024Updated 2 years ago
- Accessible and interoperable whole slide image analysis☆317Jul 28, 2026Updated 2 weeks ago
- Code from Foersch et al. (Under Construction / Development)☆38Jul 14, 2023Updated 3 years ago
- ☆88Jul 7, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains data and other materials related to the DeepPT manuscript☆17Mar 12, 2024Updated 2 years ago
- MOMA☆52Mar 14, 2024Updated 2 years ago
- "Causality: Models, Reasoning, and Inference-Judea Pearl(2009)"中文翻译及学习笔记☆19Feb 18, 2022Updated 4 years ago
- ☆10Jun 1, 2026Updated 2 months ago
- ☆14May 28, 2025Updated last year
- ☆72Sep 16, 2025Updated 10 months ago
- ☆31May 27, 2026Updated 2 months ago
- ☆14Aug 13, 2025Updated last year
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆14May 12, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆28Mar 20, 2024Updated 2 years ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆147Jun 3, 2025Updated last year
- Multimodal Whole Slide Foundation Model for Pathology - Nature Medicine☆361Dec 13, 2025Updated 8 months ago
- ☆43Apr 26, 2025Updated last year
- BEiT-based model Pre-training on Histopathological image☆78Mar 24, 2025Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- ☆12May 24, 2024Updated 2 years ago