spatkar94 / HistoTMELinks
Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)
☆15Updated last month
Alternatives and similar repositories for HistoTME
Users that are interested in HistoTME are comparing it to the libraries listed below
Sorting:
- ☆72Updated 3 months ago
- PyTorch implementation of HisToGene☆42Updated 3 years ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆42Updated 8 months ago
- GrandQC tool for tissue detection and quality control in pathology☆61Updated 5 months ago
- TCGA Pathology Reports in Machine Readable Text☆48Updated last year
- ☆54Updated 2 years ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆91Updated 6 months ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆38Updated 3 months ago
- ☆24Updated last year
- [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)☆97Updated 5 months ago
- Code from Foersch et al. (Under Construction / Development)☆37Updated 2 years ago
- Awesome List of Digital and Computational Pathology Resources☆70Updated 7 months ago
- A vision language model for gigapixel whole slide images in histopathology☆70Updated last month
- A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…☆36Updated 8 months ago
- This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.☆74Updated 5 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆105Updated 10 months ago
- BEiT-based model Pre-training on Histopathological image☆51Updated 5 months ago
- ☆112Updated last year
- MOMA☆53Updated last year
- A generative toolkit to translate H&E images to multiplexed IHC☆49Updated 8 months ago
- ☆20Updated 2 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆70Updated 6 months ago
- Deep learning on histopathology images.☆127Updated 3 years ago
- First commit☆62Updated 3 years ago
- ☆42Updated 4 months ago
- Accurate encoding of histologic images into StyleGAN space for discovery and explainability☆11Updated last month
- machine-readable information for the TCGA dataset, mirrored from other sources☆20Updated 3 years ago
- HCC_Deep_learning☆19Updated 5 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆31Updated last year
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆81Updated 3 weeks ago