spatkar94 / HistoTMELinks
Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)
☆16Updated 2 months ago
Alternatives and similar repositories for HistoTME
Users that are interested in HistoTME are comparing it to the libraries listed below
Sorting:
- A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…☆36Updated 9 months ago
- ☆73Updated 4 months ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆42Updated 9 months ago
- GrandQC tool for tissue detection and quality control in pathology☆63Updated 6 months ago
- PyTorch implementation of HisToGene☆42Updated 3 years ago
- ☆55Updated 2 years ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆40Updated 4 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆71Updated 7 months ago
- ☆42Updated 5 months ago
- ☆33Updated 2 years ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆92Updated 6 months ago
- machine-readable information for the TCGA dataset, mirrored from other sources☆20Updated 3 years ago
- ☆20Updated 2 years ago
- [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…☆24Updated last year
- TCGA Pathology Reports in Machine Readable Text☆50Updated last year
- Code from Foersch et al. (Under Construction / Development)☆37Updated 2 years ago
- CEll spatial Organization-based graph convolutional network☆26Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- A vision language model for gigapixel whole slide images in histopathology☆75Updated last week
- MOMA☆53Updated last year
- ☆114Updated last year
- ☆46Updated 3 years ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆81Updated 10 months ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆44Updated 4 years ago
- BEiT-based model Pre-training on Histopathological image☆53Updated 5 months ago
- Accurate encoding of histologic images into StyleGAN space for discovery and explainability☆11Updated 2 months ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆49Updated last year
- ☆99Updated 3 months ago
- A pan-cancer platform for mutation prediction from routine histology☆69Updated 4 years ago
- Deep learning on histopathology images.☆130Updated 4 years ago