spatkar94 / HistoTMELinks
Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)
☆20Updated 2 months ago
Alternatives and similar repositories for HistoTME
Users that are interested in HistoTME are comparing it to the libraries listed below
Sorting:
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆43Updated 9 months ago
- GrandQC tool for tissue detection and quality control in pathology☆65Updated 7 months ago
- ☆74Updated 4 months ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆40Updated 5 months ago
- PyTorch implementation of HisToGene☆42Updated 3 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆71Updated 8 months ago
- A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…☆36Updated 9 months ago
- TCGA Pathology Reports in Machine Readable Text☆52Updated last year
- ☆56Updated 2 years ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆94Updated 7 months ago
- [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…☆24Updated 2 years ago
- ☆20Updated 2 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆32Updated last year
- Solid Tumor Associative Modeling in Pathology☆86Updated last week
- ☆33Updated 2 years ago
- machine-readable information for the TCGA dataset, mirrored from other sources☆21Updated 3 years ago
- Deep learning on histopathology images.☆130Updated 4 years ago
- A vision language model for gigapixel whole slide images in histopathology☆75Updated last month
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆45Updated 4 years ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆51Updated last year
- HCC_Deep_learning☆19Updated 5 years ago
- Code from Foersch et al. (Under Construction / Development)☆37Updated 2 years ago
- ☆119Updated last year
- ☆46Updated 3 years ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆108Updated 11 months ago
- ☆43Updated 6 months ago
- First commit☆63Updated 3 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- ☆23Updated 11 months ago
- [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)☆96Updated 7 months ago