Code and data for Cell-o1.
☆29Jul 22, 2026Updated last month
Alternatives and similar repositories for cell-o1
Users that are interested in cell-o1 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆17May 14, 2025Updated last year
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆11Nov 20, 2024Updated last year
- Official repository for RAG-Gym☆127Jul 14, 2026Updated 2 months ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 3 years ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆16Nov 5, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sample models for the PhysiCell grammar / rules paper☆34Jul 21, 2025Updated last year
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Updated this week
- ☆15Jan 14, 2025Updated last year
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆71Dec 29, 2024Updated last year
- Benchmark for evaluating LLM agents in bioinformatics☆33Aug 11, 2026Updated last month
- Benchmarking gene embeddings on single, paired, and gene set tasks☆23Nov 29, 2025Updated 9 months ago
- ☆19Dec 23, 2024Updated last year
- ☆23Aug 20, 2024Updated 2 years ago
- ✨✨ Latest Advances on AI for Spectra Data Analysis (SpectraAI)☆28Nov 24, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆31Jul 2, 2025Updated last year
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Jun 5, 2025Updated last year
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆11May 16, 2023Updated 3 years ago
- ☆16Jan 23, 2025Updated last year
- Biomedical Question Answering Datasets.☆132Apr 30, 2025Updated last year
- ☆49Dec 31, 2025Updated 8 months ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- ☆43May 22, 2025Updated last year
- ☆40Jul 2, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆39May 31, 2026Updated 3 months ago
- Model for processing text sequences with coreference annotations☆14Nov 29, 2018Updated 7 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆158Updated this week
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆33Jul 17, 2026Updated 2 months ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago
- A benchmark on predicting how small molecules change gene expression in different cell types.☆19Jul 4, 2025Updated last year
- Machine learning methods for spatially resolved transcriptomics with histology images: a collection of related resources.☆10Mar 22, 2022Updated 4 years ago
- ☆10Mar 4, 2024Updated 2 years ago
- ☆17Mar 26, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆15Nov 23, 2024Updated last year
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆116Jun 28, 2026Updated 2 months ago
- ICLR 2026☆30May 13, 2026Updated 4 months ago
- ☆14Nov 29, 2022Updated 3 years ago
- ☆28Aug 10, 2025Updated last year
- ☆27Jul 2, 2024Updated 2 years ago
- MCP server for Open Targets data☆19May 15, 2026Updated 4 months ago