Alternatives and similar repositories for cell-o1

Users that are interested in cell-o1 are comparing it to the libraries listed below

• snap-stanford / BioDiscoveryAgent
  BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments
  ☆90Updated 3 months ago
• mims-harvard / Madrigal
  Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data
  ☆35Updated 2 months ago
• Genentech / PerturbQA
  ☆24Updated last month
• aristoteleo / awesome-bioagent-papers
  Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.
  ☆76Updated last week
• microsoft / zero-shot-scfoundation
  ☆73Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆98Updated last year
• zou-group / CellVoyager
  ☆93Updated last month
• HanwenXuTHU / BioTranslatorProject
  ☆35Updated 2 years ago
• Genentech / SpatialAgent
  ☆128Updated 6 months ago
• jsxlei / scCLIP
  ☆30Updated last year
• RyanWangZf / LEADS
  A specialized LLM for study search, study screening, and data extraction from medical literature.
  ☆21Updated 7 months ago
• zhao-ht / BioMaze
  ☆19Updated 7 months ago
• bowang-lab / genomic-FM
  ☆30Updated last week
• zjunlp / ChatCell
  ChatCell: Facilitating Single-Cell Analysis with Natural Language
  ☆52Updated 4 months ago
• EpistasisLab / AlzKB
  ☆19Updated last year
• addiewc / Sagittarius
  Gene expression time-series extrapolation for heterogeneous data
  ☆18Updated 2 years ago
• valence-labs / Tx-Evaluation
  Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks
  ☆11Updated 11 months ago
• ncbi-nlp / pubtator-gpt
  ☆31Updated last year
• myinsilicom / iKraph
  ☆47Updated 6 months ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆74Updated 7 months ago
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆76Updated 3 months ago
• yiqunchen / GenePT
  ☆292Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆73Updated 8 months ago
• zhoujieli / Awesome-LLM-Agents-Scientific-Discovery
  A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…
  ☆55Updated 3 weeks ago
• DeepGraphLearning / scCello
  [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model
  ☆21Updated 7 months ago
• bowang-lab / scGPT-spatial
  ☆112Updated 8 months ago
• Huatsing-Lau / GenoLLM
  LLM for genomic
  ☆13Updated last year
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated 2 months ago
• mims-harvard / PDGrapher
  Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
  ☆89Updated 3 weeks ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆96Updated 7 months ago