Code and data for Cell-o1.
☆26Sep 19, 2025Updated 5 months ago
Alternatives and similar repositories for cell-o1
Users that are interested in cell-o1 are comparing it to the libraries listed below
Sorting:
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated 9 months ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆29Feb 19, 2026Updated 2 weeks ago
- A repository for reproducing experiments from the TxPert paper☆25Jan 9, 2026Updated last month
- ☆30Jan 22, 2025Updated last year
- ☆29Dec 20, 2024Updated last year
- ☆33Nov 30, 2023Updated 2 years ago
- Benchmark agents on BioML tasks☆65Sep 14, 2025Updated 5 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆152Nov 23, 2025Updated 3 months ago
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.☆14Mar 1, 2026Updated last week
- Convolutional Channel-wise Competitive Learning for the Forward-Forward Algorithm. AAAI 2024☆12Jun 27, 2024Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆41May 29, 2024Updated last year
- An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis☆14Apr 5, 2025Updated 11 months ago
- Data visualization workshop☆11May 12, 2020Updated 5 years ago
- ☆12Sep 28, 2024Updated last year
- A MCP Task Server☆11Mar 7, 2025Updated last year
- MILTON: Disease prediction with biomarkers and augmented PheWAS analyses☆43Sep 20, 2024Updated last year
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Feb 28, 2022Updated 4 years ago
- This project attempts to model and acquire data from SF OpenData - and other sources - to predict the relative risk of fire in San Franci…☆10Jun 21, 2018Updated 7 years ago
- Heatmap-based Out-of-Distribution Detection (WACV 2023)☆13Mar 27, 2024Updated last year
- A Generative Adversarial Network Model Alternative to Animal Studies for Clinical Pathology Assessment☆15Jan 10, 2024Updated 2 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Feb 22, 2025Updated last year
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆20Jan 12, 2026Updated last month
- Visualization of nucleotide alignment algorithms 🧬 DNA sequence as input, best aligning match as output.☆13Aug 11, 2020Updated 5 years ago
- ☆14Jan 5, 2024Updated 2 years ago
- ☆10Sep 7, 2022Updated 3 years ago
- Official implementation of the paper “Endowing Vision-Language Models with System 2 Thinking for Fine-Grained Visual Recognition,” AAAI 2…☆32Jan 30, 2026Updated last month
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 7 months ago
- ☆12Nov 22, 2022Updated 3 years ago
- ☆17May 23, 2025Updated 9 months ago
- ☆13Jun 11, 2024Updated last year
- ☆12Jul 1, 2023Updated 2 years ago
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆10May 16, 2023Updated 2 years ago
- Pytorch implementation of VAFF-Net☆12Sep 2, 2022Updated 3 years ago
- LightMHC: A Light Model for pMHC Structure Prediction with Graph Neural Networks☆12Jan 9, 2024Updated 2 years ago
- Repository in Support of EAGLE Submission☆22Oct 11, 2025Updated 4 months ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Feynman-Kac steering for controllable protein diffusion☆31Jan 14, 2026Updated last month
- Tokenizing Loops of Antibodies☆24Nov 23, 2025Updated 3 months ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year