AIxBio / AgBioML-ChallengeLinks
The Agentic BioML Challenge + AutoBioML framework
☆15Updated 4 months ago
Alternatives and similar repositories for AgBioML-Challenge
Users that are interested in AgBioML-Challenge are comparing it to the libraries listed below
Sorting:
- ☆86Updated last month
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆74Updated 7 months ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆11Updated last month
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated 2 months ago
- ☆127Updated 6 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆22Updated 3 months ago
- ☆91Updated 3 weeks ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆39Updated this week
- Functional Embedding of Gene Signatures☆46Updated last year
- ☆24Updated 8 months ago
- ☆18Updated last year
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆15Updated last month
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 4 months ago
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆20Updated 4 years ago
- Python package to load and query ARCHS4 data☆23Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- ☆27Updated 6 months ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆35Updated 2 months ago
- MILTON: Disease prediction with biomarkers and augmented PheWAS analyses☆37Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 6 months ago
- ☆11Updated 4 months ago
- ProCyon: A multimodal foundation model for protein phenotypes☆45Updated last month
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆38Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- LLM agents for working with the SRA and associated bioinformatics databases.☆125Updated last week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆46Updated last year
- ☆15Updated last week
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Updated 3 months ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆81Updated last month