AIxBio / AgBioML-ChallengeLinks
The Agentic BioML Challenge + AutoBioML framework
☆14Updated 2 months ago
Alternatives and similar repositories for AgBioML-Challenge
Users that are interested in AgBioML-Challenge are comparing it to the libraries listed below
Sorting:
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆20Updated 3 years ago
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆24Updated last week
- ☆84Updated last week
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆76Updated 2 weeks ago
- ☆27Updated 4 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆17Updated last month
- ☆123Updated 4 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆73Updated 5 months ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆37Updated this week
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 3 months ago
- ☆73Updated this week
- Functional Embedding of Gene Signatures☆46Updated last year
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆35Updated 3 weeks ago
- ☆11Updated 10 months ago
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- ProCyon: A multimodal foundation model for protein phenotypes☆39Updated this week
- Python package to load and query ARCHS4 data☆23Updated last month
- ☆13Updated last month
- A repository for reproducing experiments from the TxPert paper☆14Updated 3 months ago
- Examples for gget (https://github.com/pachterlab/gget).☆38Updated 3 months ago
- Explainable AI for Bioinformatics☆124Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆36Updated last year
- The light frontend for BioChatter, in pure Python☆54Updated last month
- Course Data Analysis for Life Sciences based on the material by Rafael Irizarry & Mike Love☆16Updated 5 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆27Updated 6 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- ☆10Updated 3 years ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Updated 2 months ago