The Agentic BioML Challenge + AutoBioML framework
☆18Jun 3, 2025Updated last year
Alternatives and similar repositories for AgBioML-Challenge
Users that are interested in AgBioML-Challenge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An advanced multi-agent framework for automating complex bioinformatics workflows.☆25Jun 12, 2026Updated 2 months ago
- Benchmark agents on BioML tasks☆77Sep 14, 2025Updated 11 months ago
- Example chats from running BioMCP for demonstrations☆17Jun 20, 2025Updated last year
- ☆33Nov 30, 2023Updated 2 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- GitHub Actions for developing and maintaining Bioconductor packages☆13May 26, 2026Updated 3 months ago
- A stitching platform for InXight☆15Jun 12, 2026Updated 2 months ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 8 months ago
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆58Jun 4, 2025Updated last year
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆45Aug 21, 2024Updated 2 years ago
- Learning gene-specific regulatory elements from epigenetic data☆11May 7, 2025Updated last year
- A benchmark on predicting how small molecules change gene expression in different cell types.☆18Jul 4, 2025Updated last year
- Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for v…☆21Aug 17, 2026Updated last week
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆16Oct 21, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A talk on Makesfiles in bioinformatics☆26Jul 18, 2013Updated 13 years ago
- Introductory workshop teaching python for Data Science and Biomedical Machine Learning☆13May 13, 2022Updated 4 years ago
- R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting d…☆24Mar 22, 2026Updated 5 months ago
- Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq da…☆16May 15, 2023Updated 3 years ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 6 years ago
- script + metadata = standalone component☆46Updated this week
- A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical …☆16May 13, 2026Updated 3 months ago
- Data science in R notes☆15Apr 28, 2025Updated last year
- ProteomeLM: A proteome-scale language model allowing fast prediction of protein-protein interactions and gene essentiality across taxa☆36Jun 10, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆17Jan 30, 2026Updated 7 months ago
- ☆10Jul 10, 2023Updated 3 years ago
- single-cell Nucleosome Methylation Transcription☆14Mar 5, 2018Updated 8 years ago
- Model Context Protocol (MCP)☆17Mar 25, 2025Updated last year
- Core functionality of the CGAT code☆34Mar 8, 2026Updated 5 months ago
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆34Mar 20, 2026Updated 5 months ago
- ☆20May 31, 2024Updated 2 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 5 years ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆13Mar 8, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- llm agent for drug discovery☆42Feb 24, 2026Updated 6 months ago
- Code and data for Cell-o1.☆29Jul 22, 2026Updated last month
- Official Code for Learning to Sample Effective and Diverse Prompts for Text-to-Image Generation (CVPR 2025)☆15Apr 2, 2025Updated last year
- Wrappers for easier generative biology workflows☆22Sep 17, 2025Updated 11 months ago
- The BioContextAI Registry for biomedical MCP servers☆22Aug 16, 2026Updated 2 weeks ago
- ☆15Jun 27, 2025Updated last year
- Software package to design bridge RNAs as described by Durrant & Perry et al.☆27Sep 25, 2025Updated 11 months ago