The Agentic BioML Challenge + AutoBioML framework
☆18Jun 3, 2025Updated last year
Alternatives and similar repositories for AgBioML-Challenge
Users that are interested in AgBioML-Challenge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Apr 23, 2026Updated 4 months ago
- An advanced multi-agent framework for automating complex bioinformatics workflows.☆28Jun 12, 2026Updated 3 months ago
- Benchmark agents on BioML tasks☆77Sep 14, 2025Updated last year
- Fast string distance computation in Python☆16Dec 21, 2022Updated 3 years ago
- Example chats from running BioMCP for demonstrations☆17Jun 20, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆33Nov 30, 2023Updated 2 years ago
- A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein languag…☆19Jan 27, 2026Updated 7 months ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆30Jan 12, 2026Updated 8 months ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13May 26, 2026Updated 3 months ago
- A stitching platform for InXight☆15Jun 12, 2026Updated 3 months ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 9 months ago
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆58Jun 4, 2025Updated last year
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆45Aug 21, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Learning gene-specific regulatory elements from epigenetic data☆11May 7, 2025Updated last year
- A benchmark on predicting how small molecules change gene expression in different cell types.☆19Jul 4, 2025Updated last year
- Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for v…☆21Sep 2, 2026Updated 2 weeks ago
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆16Oct 21, 2025Updated 10 months ago
- A talk on Makesfiles in bioinformatics☆26Jul 18, 2013Updated 13 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Mar 22, 2024Updated 2 years ago
- Introductory workshop teaching python for Data Science and Biomedical Machine Learning☆13May 13, 2022Updated 4 years ago
- R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting d…☆24Mar 22, 2026Updated 5 months ago
- Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq da…☆16May 15, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 6 years ago
- Data science in R notes☆15Apr 28, 2025Updated last year
- A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical …☆16May 13, 2026Updated 4 months ago
- Tool to import data in bulk into CosmosDB from Azure data lake and Azure blob storage☆13Jun 14, 2023Updated 3 years ago
- ProteomeLM: A proteome-scale language model allowing fast prediction of protein-protein interactions and gene essentiality across taxa☆39Jun 10, 2026Updated 3 months ago
- ☆10Jul 10, 2023Updated 3 years ago
- Core functionality of the CGAT code☆34Mar 8, 2026Updated 6 months ago
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆34Mar 20, 2026Updated 6 months ago
- A desktop karaoke app that transforms your local music library into sing-along tracks using on-device AI stem separation and online synce…☆30Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 5 years ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆13Mar 8, 2025Updated last year
- Code and data for Cell-o1.☆29Jul 22, 2026Updated last month
- llm agent for drug discovery☆45Feb 24, 2026Updated 6 months ago
- Wrappers for easier generative biology workflows☆22Sep 17, 2025Updated last year
- The BioContextAI Registry for biomedical MCP servers☆23Updated this week
- Official Code for Learning to Sample Effective and Diverse Prompts for Text-to-Image Generation (CVPR 2025)☆15Apr 2, 2025Updated last year