Alternatives and similar repositories for K-RET:

Users that are interested in K-RET are comparing it to the libraries listed below

• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• lasigeBioTM / BENT
  Biomedical Term Annotator
  ☆9Updated 2 months ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• biocypher / clinical-knowledge-graph
  ☆18Updated 10 months ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated 5 months ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 4 years ago
• ga4gh / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆13Updated last week
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated last month
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated last year
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆53Updated 2 weeks ago
• bio2bel / drugbank
  A Bio2BEL package for DrugBank (https://www.drugbank.ca)
  ☆9Updated 4 years ago
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated last week
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆16Updated last month
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆24Updated 8 months ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆62Updated last year
• OntoGene / OGER
  ☆24Updated 4 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆19Updated 10 months ago
• dermatologist / ckblib
  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
  ☆16Updated 10 months ago
• jakelever / biotext
  Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
  ☆14Updated 11 months ago
• jakelever / biowordlists
  Biomedical wordlists (of drugs, genes, etc) for several text mining projects
  ☆18Updated 2 years ago
• EBISPOT / EFO-UKB-mappings
  ☆14Updated 5 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated last year
• ncbi / tmVar3
  ☆17Updated last year
• NCIP / pathway-interaction-database
  The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and …
  ☆15Updated 9 years ago
• AnacletoLAB / RNA-KG
  ☆21Updated 5 months ago
• esacinc / PDC-Public
  The public repository for the Proteomic Data Commons UI and APIs
  ☆14Updated 11 months ago