hms-dbmi / Drug_Explorer
Interactive & explainable GNN for drug repurposing
β11Updated 10 months ago
Alternatives and similar repositories for Drug_Explorer:
Users that are interested in Drug_Explorer are comparing it to the libraries listed below
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.β41Updated 2 months ago
- πͺ What's the latest version for each database?β27Updated this week
- A stitching platform for InXightβ16Updated 2 months ago
- Target prioritization using network representation learningβ11Updated 3 years ago
- Draft cell type definitions from data - candidates for inclusion in CLβ12Updated last week
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)β21Updated 3 years ago
- Discoverability for gene searchβ12Updated last year
- PlaNet: Predicting population response to drugs via clinical knowledge graphβ19Updated 3 months ago
- π‘ Unified access to OLS instances like from the EBI and TIBβ12Updated last year
- MyChem.info: A BioThings API for chemical/drug annotationsβ16Updated this week
- πΊοΈ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaβ¦β51Updated this week
- code for Gogleva et al manuscriptβ45Updated 2 years ago
- R package with netDx software and data for examplesβ12Updated last year
- β13Updated 7 months ago
- β17Updated 2 months ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingβ32Updated 7 years ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networksβ23Updated last month
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discoveryβ21Updated 3 months ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.β12Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)β27Updated 2 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input geβ¦β20Updated last week
- Map your disease and phenotype terms to the Open Targets platform ontologyβ21Updated last month
- Code for the data processing pipelineβ17Updated 3 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.β57Updated last year
- BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.β14Updated last week
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatioβ¦β13Updated last week
- Unified Clinical Vocabulary Embeddings for Advancing Precision Medicineβ43Updated 3 weeks ago
- Build PharMeBINet from different sources.β13Updated this week
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)β39Updated last month
- HuBMAP Data Portal front endβ12Updated this week