Alternatives and similar repositories for flexynesis:

Users that are interested in flexynesis are comparing it to the libraries listed below

• cellatlas / human
  ☆42Updated 4 months ago
• BIMSBbioinfo / VoltRon
  Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
  ☆91Updated last week
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆57Updated this week
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆56Updated 9 months ago
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆44Updated last year
• DanHanh / scLinear
  ☆19Updated 8 months ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆82Updated last month
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆57Updated last year
• rajewsky-lab / spacemake
  ☆41Updated this week
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆51Updated 2 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 2 weeks ago
• gexijin / idepGolem
  ☆38Updated 2 weeks ago
• hukai916 / scATACpipe
  ☆27Updated 5 months ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated last year
• nf-core / spatialvi
  Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…
  ☆59Updated last week
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated last month
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated last year
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆22Updated 3 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆66Updated 9 months ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆24Updated 9 months ago
• WCSCourses / SingleCell_23
  Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells
  ☆16Updated 7 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆99Updated last week
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 2 weeks ago
• vitkl / orthologsBioMART
  One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART
  ☆22Updated 3 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆142Updated last year
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆120Updated this week
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆73Updated 10 months ago