Alternatives and similar repositories for pubtator-gpt:

Users that are interested in pubtator-gpt are comparing it to the libraries listed below

• ncbi / GNorm2
  ☆18Updated last year
• ncbi / AIONER
  AIONER
  ☆49Updated 7 months ago
• ncbi / tmVar3
  ☆16Updated last year
• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆24Updated 2 years ago
• ncbi / BioRED
  ☆22Updated last year
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆14Updated this week
• EmilyAlsentzer / rare-disease-simulation
  Simulate patients with rare genetic conditions
  ☆21Updated last year
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆52Updated last week
• ncbi / BioREx
  ☆32Updated 3 weeks ago
• AnacletoLAB / RNA-KG
  ☆20Updated 3 months ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆55Updated 3 weeks ago
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆45Updated 2 months ago
• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆76Updated last year
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 3 years ago
• ncbi-nlp / PhenoTagger
  PhenoTagger
  ☆55Updated last year
• sujunhao / RENET2
  RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion
  ☆28Updated 3 years ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆41Updated 4 years ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated 4 months ago
• danasilv / Diffuse2Direct
  Orientation of the protein-protein interaction network using network diffusion techniques
  ☆15Updated 3 years ago
• larsjuhljensen / tagger
  ☆22Updated 2 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆31Updated last year
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 6 years ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆40Updated this week
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆39Updated 3 years ago
• WGLab / PhenoGPT
  ☆21Updated 2 months ago
• jakelever / cancermine
  Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
  ☆41Updated last year
• anergictcell / pyhpo
  A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
  ☆26Updated last week
• jakelever / biowordlists
  Biomedical wordlists (of drugs, genes, etc) for several text mining projects
  ☆18Updated last year