Alternatives and similar repositories for pubtator-gpt

Users that are interested in pubtator-gpt are comparing it to the libraries listed below

• ncbi / GNorm2
  ☆20Updated last year
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆55Updated this week
• ncbi / AIONER
  AIONER
  ☆55Updated 9 months ago
• ncbi / tmVar3
  ☆17Updated 2 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆69Updated 2 months ago
• idekerlab / llm_evaluation_for_gene_set_interpretation
  Code space for 'Evaluation of large language models for discovery of gene set function'
  ☆36Updated 4 months ago
• ai4nucleome / BioMaster
  ☆48Updated this week
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆16Updated last month
• biocypher / clinical-knowledge-graph
  ☆18Updated 11 months ago
• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆24Updated 2 years ago
• EmilyAlsentzer / rare-disease-simulation
  Simulate patients with rare genetic conditions
  ☆21Updated last year
• ncbi / BioREx
  ☆34Updated 3 months ago
• astrazeneca-cgr-publications / milton-release
  MILTON: Disease prediction with biomarkers and augmented PheWAS analyses
  ☆32Updated 7 months ago
• mims-harvard / ProCyon
  ProCyon: A multimodal foundation model for protein phenotypes
  ☆33Updated 2 months ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆51Updated last month
• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆78Updated last year
• jakelever / cancermine
  Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
  ☆41Updated 2 years ago
• biagent-dev / bia
  BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow
  ☆33Updated 8 months ago
• AnacletoLAB / RNA-KG
  ☆22Updated 6 months ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆34Updated this week
• ailabstw / scDrug
  scDrug: From scRNA-seq to Drug Repositioning
  ☆33Updated 2 years ago
• snap-stanford / BioDiscoveryAgent
  BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments
  ☆68Updated 5 months ago
• zjunlp / ChatCell
  ChatCell: Facilitating Single-Cell Analysis with Natural Language
  ☆49Updated last year
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated 5 months ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• mims-harvard / Madrigal
  Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data
  ☆24Updated last month
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated this week
• biocypher / biochatter-next
  The advanced implementation for BioChatter, using Next.js
  ☆13Updated 3 months ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated 6 months ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago